Evidence map›Paper›PMID 23968564›Full record

ArticleACS synthetic biology2013

Refactoring the silent spectinabilin gene cluster using a plug-and-play scaffold.

Zengyi Shao, Guodong Rao, Chun Li, Zhanar Abil, Yunzi Luo, Huimin Zhao

Abstract read
In one paragraph

Article in ACS synthetic biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 83 papers.

0numbers the graph read from it
0cells of the map it votes in
83citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

83 citing papers in PubMed.

  1. Article
  2. Engineering an IndustrialMicroorganisms · 2026
    Article
  3. Developing the protein quality control system inSynthetic and systems biotechnology · 2026
    Article
  4. Review
  5. Review
  6. Article
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  8. Article
  9. Highly efficient CRISPR-Cas9 base editing inApplied and environmental microbiology · 2025
    Article
  10. Article
  11. CRISPR-Cas9-driven genome editing inFrontiers in microbiology · 2025
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. CRISPR/Cas9-mediated genome editing in vancomycin-producing strainFrontiers in bioengineering and biotechnology · 2023
    Article

23 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Zengyi ShaoDepartment of Chemical and Biomolecular Engineering, ‡Department of Chemistry, and §Department of Biochemistry, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, United States.
Guodong Rao
Chun Li
Zhanar Abil
Yunzi Luo
Huimin Zhao

Funding

Structural Elucidation and Biosynthesis P01GM077596 · NIGMS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI METCALF, WILLIAM W · 2007 to 2016
$15.3M
NIGMS NIH HHS P01 GM077596
6 · The paper itself

Abstract

Natural products (secondary metabolites) are a rich source of compounds with important biological activities. Eliciting pathway expression is always challenging but extremely important in natural product discovery because an individual pathway is tightly controlled through a unique regulation mechanism and hence often remains silent under the routine culturing conditions. To overcome the drawbacks of the traditional approaches that lack general applicability, we developed a simple synthetic biology approach that decouples pathway expression from complex native regulations. Briefly, the entire silent biosynthetic pathway is refactored using a plug-and-play scaffold and a set of heterologous promoters that are functional in a heterologous host under the target culturing condition. Using this strategy, we successfully awakened the silent spectinabilin pathway from Streptomyces orinoci. This strategy bypasses the traditional laborious processes to elicit pathway expression and represents a new platform for discovering novel natural products.

Indexed as

Multigene FamilySynthetic BiologyBacterial ProteinsBiological ProductsBiosynthetic PathwaysChromatography, LiquidCloning, MolecularDNA FragmentationEscherichia coliMass SpectrometryPromoter Regions, GeneticPyronesReal-Time Polymerase Chain ReactionRNA, BacterialSaccharomyces cerevisiaeSequence Analysis, RNABacterial ProteinsBiological ProductsPyronesRNA, Bacterialspectinabilin

Identifiers

PMID23968564
PMCPMC4326240

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.