Evidence map›Paper›PMID 23967315›Full record

ArticlePloS one2013

Slower uncoating is associated with impaired replicative capability of simian-tropic HIV-1.

Ken Kono, Eri Takeda, Hiromi Tsutsui, Ayumu Kuroishi, Amy E Hulme, Thomas J Hope, Emi E Nakayama, Tatsuo Shioda

Abstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Ken KonoDepartment of Viral Infections, Research Institute for Microbial Diseases, Osaka University, Suita, Osaka, Japan.
Eri Takeda
Hiromi Tsutsui
Ayumu Kuroishi
Amy E Hulme
Thomas J Hope
Emi E Nakayama
Tatsuo Shioda

Funding

X-ray Cryst. CoreP50GM082545 · NIGMS · UNIVERSITY OF UTAH · PI SUNDQUIST, WESLEY I. · 2007 to 2018
$51.1M
INTRACELLULAR TRAFFICKING OF HIV-1 PARTICLESR01AI047770 · NIAID · UNIVERSITY OF ILLINOIS AT CHICAGO · PI HOPE, THOMAS · 2000 to 2010
$2.9M
Analysis of HIV-1 UncoatingF32AI089359 · NIAID · NORTHWESTERN UNIVERSITY AT CHICAGO · PI HULME, AMY ELIZABETH · 2011 to 2013
$176k
NIAID NIH HHS F32 AI089359NIAID NIH HHS F32AI089359NIAID NIH HHS R01 AI047770NIAID NIH HHS R01 AI47770NIGMS NIH HHS P50 GM082545
6 · The paper itself

Abstract

Human immunodeficiency virus type 1 (HIV-1) productively infects only humans and chimpanzees, but not Old World monkeys, such as rhesus and cynomolgus (CM) monkeys. To establish a monkey model of HIV-1/AIDS, several HIV-1 derivatives have been constructed. We previously generated a simian-tropic HIV-1 that replicates efficiently in CM cells. This virus encodes a capsid protein (CA) with SIVmac239-derived loops between α-helices 4 and 5 (L4/5) and between α-helices 6 and 7 (L6/7), along with the entire vif from SIVmac239 (NL-4/5S6/7SvifS). These SIVmac239-derived sequences were expected to protect the virus from HIV-1 restriction factors in monkey cells. However, the replicative capability of NL-4/5S6/7SvifS in human cells was severely impaired. By long-term cultivation of human CEM-SS cells infected with NL-4/5S6/7SvifS, we succeeded in partially rescuing the impaired replicative capability of the virus in human cells. This adapted virus encoded a G-to-E substitution at the 116(th) position of the CA (NL-4/5SG116E6/7SvifS). In the work described here, we explored the mechanism by which the replicative capability of NL-4/5S6/7SvifS was impaired in human cells. Quantitative analysis (by real-time PCR) of viral DNA synthesis from infected cells revealed that NL-4/5S6/7SvifS had a major defect in nuclear entry. Mutations in CA are known to affect viral core stability and result in deleterious effects in HIV-1 infection; therefore, we measured the kinetics of uncoating of these viruses. The uncoating of NL-4/5S6/7SvifS was significantly slower than that of wild type HIV-1 (WT), whereas the uncoating of NL-4/5SG116E6/7SvifS was similar to that of WT. Our results suggested that the lower replicative capability of NL-4/5S6/7SvifS in human cells was, at least in part, due to the slower uncoating of this virus.

Indexed as

Virus ReplicationVirus UncoatingAnimalsCapsid ProteinsCell LineGene OrderGenetic VectorsHEK293 CellsHIV-1HIV Reverse TranscriptaseHumansMutationSimian Acquired Immunodeficiency SyndromeSimian Immunodeficiency VirusTime FactorsCapsid ProteinsHIV Reverse Transcriptase

Identifiers

PMID23967315
PMCPMC3742594

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.