Evidence map›Paper›PMID 23966510›Full record

ArticleJournal of clinical microbiology2013

Comparison of 14 molecular assays for detection of Mycobacterium tuberculosis complex in bronchoalveolar lavage fluid.

Onno W Akkerman, Tjip S van der Werf, Maria de Boer, Jessica L de Beer, Zeaur Rahim, John W A Rossen, Dick van Soolingen, Huib A M Kerstjens, Adri G M van der Zanden

Open access · bronzeAbstract readComparative StudyEvaluation Study
In one paragraph

Article in Journal of clinical microbiology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
0.3field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Article
  3. Air-fluid level in the mediastinum.Journal of the American College of Emergency Physicians open · 2023
    Article
  4. Exhaled Mycobacterium tuberculosis Predicts Incident Infection in Household Contacts.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2023
    Article
  5. Simultaneous Detection of Mycobacterium tuberculosis and Atypical Mycobacteria by DNA-Microarray in Egypt.Medical principles and practice : international journal of the Kuwait University, Health Science Centre · 2022
    Article
  6. Article
  7. Observational
  8. GeneXpertAnnals of translational medicine · 2020
    Article
  9. Article
  10. Article
  11. Optimized Lysis-Extraction Method Combined WithFrontiers in microbiology · 2018
    Article
  12. Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Onno W AkkermanUniversity of Groningen, University Medical Center Groningen, Department of Pulmonology and Tuberculosis, Groningen, the Netherlands.
Tjip S van der Werf
Maria de Boer
Jessica L de Beer
Zeaur Rahim
John W A Rossen
Dick van Soolingen
Huib A M Kerstjens
Adri G M van der Zanden
National Institute for Public Health and the Environment · NLUniversity Medical Center Groningen · NLUniversity of Groningen · NLInternational Centre for Diarrhoeal Disease Research · BD

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We compared 14 molecular assays for their ability to detect the Mycobacterium tuberculosis complex in bronchoalveolar lavage fluid samples. Three approaches were followed. First, by using DNA from Mycobacterium bovis BCG, we determined the detection limits of the assays using routine molecular methods. Second, in order to determine the analytical sensitivities of the assays, we added one of four M. tuberculosis isolates with various numbers of the insertion sequence IS6110 to N-acetyl-l-cysteine (NALC)-NaOH-treated bronchoalveolar lavage fluid samples in dilutions of 1:10 to 1:10,000,000. Third, intertest variabilities were measured and defined by the standard deviations for the quantitation cycle (Cq) values of three positive test results per dilution per assay. The 14 assays tested had similar analytical sensitivities, except for GeneXpert, which had an analytical sensitivity that was 10- to 100-fold lower than that of the other assays. The MP MTB/NTM test and the in-house TaqMan-10 revealed the best performances for the detection limit and had the highest analytical sensitivities. Most of the tests performed well regarding detection limit and analytical sensitivity for the detection of the M. tuberculosis complex in serial dilutions, and the differences were small. The MP MTB/NTM and the in-house TaqMan-10 assays revealed the best, and GeneXpert the worst, overall performances.

Indexed as

Bacteriological TechniquesBronchoalveolar Lavage FluidHumansMolecular Diagnostic TechniquesMycobacterium tuberculosisSensitivity and SpecificityTuberculosis

Identifiers

PMID23966510
PMCPMC3889726
OpenAlexW2142751821

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.