Evidence map›Paper›PMID 23966100›Full record

ArticleThe ISME journal2014

Lineage-specific molecular probing reveals novel diversity and ecological partitioning of haplosporidians.

Hanna Hartikainen, Oliver S Ashford, Cédric Berney, Beth Okamura, Stephen W Feist, Craig Baker-Austin, Grant D Stentiford, David Bass

Open access · bronzeAbstract read
In one paragraph

Article in The ISME journal, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
12.5field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 96 citations in OpenAlex.

  1. First Report ofPathogens (Basel, Switzerland) · 2026
    Article
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  5. eLife · 2022
    Article
  6. Review
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  15. Article
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  18. Review
  19. Ecological functions of zoosporic hyperparasites.Frontiers in microbiology · 2014
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Hanna HartikainenDepartment of Life Sciences, The Natural History Museum, London, UK.
Oliver S AshfordDepartment of Life Sciences, The Natural History Museum, London, UK.
Cédric BerneyDepartment of Life Sciences, The Natural History Museum, London, UK.
Beth OkamuraDepartment of Life Sciences, The Natural History Museum, London, UK.
Stephen W FeistCentre for Environment, Fisheries and Aquaculture Science (Cefas), The Nothe, UK.
Craig Baker-AustinCentre for Environment, Fisheries and Aquaculture Science (Cefas), The Nothe, UK.
Grant D Stentiford1] Centre for Environment, Fisheries and Aquaculture Science (Cefas), The Nothe, UK [2] European Union Reference Laboratory for Crustacean Diseases, Centre for Environment, Fisheries and Aquaculture Science (Cefas), The Nothe, UK.
David BassDepartment of Life Sciences, The Natural History Museum, London, UK.
Natural History Museum · GBCentre for Environment, Fisheries and Aquaculture Science · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Haplosporidians are rhizarian parasites of mostly marine invertebrates. They include the causative agents of diseases of commercially important molluscs, including MSX disease in oysters. Despite their importance for food security, their diversity and distributions are poorly known. We used a combination of group-specific PCR primers to probe environmental DNA samples from planktonic and benthic environments in Europe, South Africa and Panama. This revealed several highly distinct novel clades, novel lineages within known clades and seasonal (spring vs autumn) and habitat-related (brackish vs littoral) variation in assemblage composition. High frequencies of haplosporidian lineages in the water column provide the first evidence for life cycles involving planktonic hosts, host-free stages or both. The general absence of haplosporidian lineages from all large online sequence data sets emphasises the importance of lineage-specific approaches for studying these highly divergent and diverse lineages. Combined with host-based field surveys, environmental sampling for pathogens will enhance future detection of known and novel pathogens and the assessment of disease risk.

Indexed as

BiodiversityEnvironmental MicrobiologyPhylogenyData MiningEcologyEcosystemEuropeHaplosporidaMolecular ProbesMolecular Probes

Identifiers

PMID23966100
PMCPMC3869015
OpenAlexW1980936278

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.