Evidence map›Paper›PMID 23965998›Full record

ArticleThe Journal of biological chemistry2013

Translesion synthesis of 8,5'-cyclopurine-2'-deoxynucleosides by DNA polymerases η, ι, and ζ.

Changjun You, Ashley L Swanson, Xiaoxia Dai, Bifeng Yuan, Jianshuang Wang, Yinsheng Wang

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 48 papers.

0numbers the graph read from it
0cells of the map it votes in
48citing papers in PubMed
3.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

48 citing papers in PubMed, 62 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Article
  6. When UDG and hAPE1 Meet Cyclopurines. How (5'Molecules (Basel, Switzerland) · 2021
    Article
  7. Article
  8. Products of Oxidative Guanine Damage Form Base Pairs with Guanine.International journal of molecular sciences · 2020
    Review
  9. Article
  10. The roles of polymerases ν and θ in replicative bypass ofThe Journal of biological chemistry · 2020
    Article
  11. Review
  12. Article
  13. Article
  14. The Impact of Minor-GrooveACS chemical biology · 2019
    Article
  15. Repair and translesion synthesis ofThe Journal of biological chemistry · 2019
    Article
  16. Review
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Changjun YouFrom the Department of Chemistry and.
Ashley L Swanson
Xiaoxia Dai
Bifeng Yuan
Jianshuang Wang
Yinsheng Wang
University of California, Riverside · US

Funding

Research Training in Environmental ToxicologyT32ES018827 · NIEHS · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI Yinsheng Wang · 2010 to 2026
$5.3M
Oxidative DNA Damage and CpG MutagenesisR01CA101864 · NCI · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI WANG, YINSHENG · 2004 to 2015
$2.8M
NCI NIH HHS R01 CA101864NIEHS NIH HHS T32 ES018827
6 · The paper itself

Abstract

Reactive oxygen species can give rise to a battery of DNA damage products including the 8,5'-cyclo-2'-deoxyadenosine (cdA) and 8,5'-cyclo-2'-deoxyguanosine (cdG) tandem lesions. The 8,5'-cyclopurine-2'-deoxynucleosides are quite stable lesions and are valid and reliable markers of oxidative DNA damage. However, it remains unclear how these lesions compromise DNA replication in mammalian cells. Previous in vitro biochemical assays have suggested a role for human polymerase (Pol) η in the insertion step of translesion synthesis (TLS) across the (5'S) diastereomers of cdA and cdG. Using in vitro steady-state kinetic assay, herein we showed that human Pol ι and a two-subunit yeast Pol ζ complex (REV3/REV7) could function efficiently in the insertion and extension steps, respectively, of TLS across S-cdA and S-cdG; human Pol κ and Pol η could also extend past these lesions, albeit much less efficiently. Results from a quantitative TLS assay showed that, in human cells, S-cdA and S-cdG inhibited strongly DNA replication and induced substantial frequencies of mutations at the lesion sites. Additionally, Pol η, Pol ι, and Pol ζ, but not Pol κ, had important roles in promoting replication through S-cdA and S-cdG in human cells. Based on these results, we propose a model for TLS across S-cdA and S-cdG in human cells, where Pol η and/or Pol ι carries out nucleotide insertion opposite the lesion, whereas Pol ζ executes the extension step.

Indexed as

DNA DamageBase SequenceDeoxyadenosinesDeoxyguanosineDNADNA AdductsDNA-Directed DNA PolymeraseDNA Polymerase iotaDNA ReplicationGene Knockdown TechniquesHumansKineticsMolecular Sequence DataReal-Time Polymerase Chain ReactionRNA, Small InterferingSaccharomyces cerevisiae8,5'-cyclo-2'-deoxyadenosine8,5'-cyclo-2'-deoxyguanosineDeoxyadenosinesDeoxyguanosineDNADNA AdductsDNA-Directed DNA PolymeraseDNA Polymerase iotaDNA polymerase zetaRad30 proteinRNA, Small InterferingY-Family DNA PolymerasesDNA DamageDNA PolymeraseDNA ReplicationMutagenesis Site SpecificOxygen Radicals

Identifiers

PMID23965998
PMCPMC3789955
OpenAlexW2001866815

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.