Evidence map›Paper›PMID 23965990›Full record

ArticleThe Journal of biological chemistry2013

Effect of charged residues in the N-domain of Sup35 protein on prion [PSI+] stability and propagation.

Stanislav A Bondarev, Vadim V Shchepachev, Andrey V Kajava, Galina A Zhouravleva

Abstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Prion-Dependent Lethality ofInternational journal of molecular sciences · 2025
    Article
  2. How Big Is the Yeast Prion Universe?International journal of molecular sciences · 2023
    Review
  3. Article
  4. Nonsense Mutations in the YeastInternational journal of molecular sciences · 2020
    Article
  5. Design of a New [Frontiers in molecular neuroscience · 2019
    Article
  6. Article
  7. The [PSIScientific reports · 2017
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Stanislav A BondarevFrom the Department of Genetics and Biotechnology, St. Petersburg State University, Saint Petersburg, Russia.
Vadim V Shchepachev
Andrey V Kajava
Galina A Zhouravleva

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Recent studies have shown that Sup35p prion fibrils probably have a parallel in-register β-structure. However, the part(s) of the N-domain critical for fibril formation and maintenance of the [PSI(+)] phenotype remains unclear. Here we designed a set of five SUP35 mutant alleles (sup35(KK)) with lysine substitutions in each of five N-domain repeats, and investigated their effect on infectivity and ability of corresponding proteins to aggregate and coaggregate with wild type Sup35p in the [PSI(+)] strain. Alleles sup35-M1 (Y46K/Q47K) and sup35-M2 (Q61K/Q62K) led to prion loss, whereas sup35-M3 (Q70K/Q71K), sup35-M4 (Q80K/Q81K), and sup35-M5 (Q89K/Q90K) were able to maintain the [PSI(+)] prion. This suggests that the critical part of the parallel in-register β-structure for the studied [PSI(+)] prion variant lies in the first 63-69 residues. Our study also reveals an unexpected interplay between the wild type Sup35p and proteins expressed from the sup35(KK) alleles during prionization. Both Sup35-M1p and Sup35-M2p coaggregated with Sup35p, but only sup35-M2 led to prion loss in a dominant manner. We suggest that in the fibrils, Sup35p can bind to Sup35-M1p in the same conformation, whereas Sup35-M2p only allowed the Sup35p conformation that leads to the non-heritable fold. Mutations sup35-M4 and sup35-M5 influence the structure of the prion forming region to a lesser extent, and can lead to the formation of new prion variants.

Indexed as

AllelesAmino AcidsAmino Acid SequenceHomozygoteKineticsModels, BiologicalMolecular Sequence DataMutant ProteinsMutationPeptide Termination FactorsPhenotypePrionsProtein BindingProtein StabilityProtein Structure, QuaternaryProtein Structure, TertiaryAmino AcidsMutant ProteinsPeptide Termination FactorsPrionsSaccharomyces cerevisiae ProteinsSUP35 protein, S cerevisiaeAmyloidPrionsProtein MisfoldingProtein Structure[PSI+]Saccharomyces cerevisiaeSuperpleated β-StructureTranslation Release FactorsTranslation Termination

Identifiers

PMID23965990
PMCPMC3789951

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.