Evidence map›Paper›PMID 23965307›Full record

ArticleNucleic acids research2013

Structural insight into LexA-RecA* interaction.

Lidija Kovačič, Nejc Paulič, Adrijana Leonardi, Vesna Hodnik, Gregor Anderluh, Zdravko Podlesek, Darja Žgur-Bertok, Igor Križaj, Matej Butala

Abstract read
In one paragraph

Article in Nucleic acids research, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed.

  1. Article
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  4. Review
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  9. Review
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  16. Sending out an SOS - the bacterial DNA damage response.Genetics and molecular biology · 2022
    Article
  17. Article
  18. Article
  19. Article
  20. Two components of DNA replication-dependent LexA cleavage.The Journal of biological chemistry · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Lidija KovačičDepartment of Molecular and Biomedical Sciences, JoŽef Stefan Institute, Jamova 39, 1000 Ljubljana, Slovenia, Department of Biology, University of Ljubljana, Biotechnical Faculty, Večna pot 111, 1000 Ljubljana, Slovenia, National Institute of Chemistry, 1000 Ljubljana, Slovenia, Department of Chemistry and Biochemistry, Faculty of Chemistry and Chemical Technology, University of Ljubljana, Aškerčeva 5, SI-1000 Ljubljana, Slovenia and Centre of Excellence for Integrated Approaches in Chemistry and Biology of Proteins, Jamova 39, 1000 Ljubljana, Slovenia.
Nejc Paulič
Adrijana Leonardi
Vesna Hodnik
Gregor Anderluh
Zdravko Podlesek
Darja Žgur-Bertok
Igor Križaj
Matej Butala

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

RecA protein is a hallmark for the bacterial response to insults inflicted on DNA. It catalyzes the strand exchange step of homologous recombination and stimulates self-inactivation of the LexA transcriptional repressor. Importantly, by these activities, RecA contributes to the antibiotic resistance of bacteria. An original way to decrease the acquisition of antibiotic resistance would be to block RecA association with LexA. To engineer inhibitors of LexA-RecA complex formation, we have mapped the interaction area between LexA and active RecA-ssDNA filament (RecA*) and generated a three-dimensional model of the complex. The model revealed that one subunit of the LexA dimer wedges into a deep helical groove of RecA*, forming multiple interaction sites along seven consecutive RecA protomers. Based on the model, we predicted that LexA in its DNA-binding conformation also forms a complex with RecA* and that the operator DNA sterically precludes interaction with RecA*, which guides the induction of SOS gene expression. Moreover, the model shows that besides the catalytic C-terminal domain of LexA, its N-terminal DNA-binding domain also interacts with RecA*. Because all the model-based predictions have been confirmed experimentally, the presented model offers a validated insight into the critical step of the bacterial DNA damage response.

Indexed as

Amino Acid SequenceBacterial ProteinsLexA Repressor ProteinModels, MolecularMolecular Sequence DataOperator Regions, GeneticRec A RecombinasesRepressor ProteinsSerine EndopeptidasesSOS Response, GeneticsBacterial ProteinsLexA Repressor ProteinRec A RecombinasesRepressor ProteinsSerine Endopeptidases

Identifiers

PMID23965307
PMCPMC3834820

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.