Evidence map›Paper›PMID 23964026›Full record

ArticleThe Plant cell2013

The Arabidopsis metacaspase9 degradome.

Liana Tsiatsiani, Evy Timmerman, Pieter-Jan De Bock, Dominique Vercammen, Simon Stael, Brigitte van de Cotte, An Staes, Marc Goethals, Tine Beunens, Petra Van Damme and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in The Plant cell, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed
4.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed, 125 citations in OpenAlex.

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  14. Structure-function study of a CaProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
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  17. Article
  18. Sensitive Plant N-Terminome Profiling with HUNTER.Methods in molecular biology (Clifton, N.J.) · 2022
    Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Liana TsiatsianiDepartment of Plant Systems Biology, VIB, 9052 Ghent, Belgium.
Evy Timmerman
Pieter-Jan De Bock
Dominique Vercammen
Simon Stael
Brigitte van de Cotte
An Staes
Marc Goethals
Tine Beunens
Petra Van Damme
Kris Gevaert
Frank Van Breusegem
Ghent University · BEVIB-UGent Center for Plant Systems Biology · BEVIB-UGent Center for Medical Biotechnology · BE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Metacaspases are distant relatives of the metazoan caspases, found in plants, fungi, and protists. However, in contrast with caspases, information about the physiological substrates of metacaspases is still scarce. By means of N-terminal combined fractional diagonal chromatography, the physiological substrates of metacaspase9 (MC9; AT5G04200) were identified in young seedlings of Arabidopsis thaliana on the proteome-wide level, providing additional insight into MC9 cleavage specificity and revealing a previously unknown preference for acidic residues at the substrate prime site position P1'. The functionalities of the identified MC9 substrates hinted at metacaspase functions other than those related to cell death. These results allowed us to resolve the substrate specificity of MC9 in more detail and indicated that the activity of phosphoenolpyruvate carboxykinase 1 (AT4G37870), a key enzyme in gluconeogenesis, is enhanced upon MC9-dependent proteolysis.

Indexed as

ProteolysisAmino AcidsAmino Acid SequenceArabidopsisArabidopsis ProteinsBiocatalysisCaspasesGene Expression Regulation, PlantGluconeogenesisMolecular Sequence DataMutant ProteinsPeptidesPhosphoenolpyruvate Carboxykinase (ATP)Plants, Genetically ModifiedProtein Processing, Post-TranslationalProtein TransportAmino AcidsArabidopsis ProteinsCaspasesmetacaspase 9, ArabidopsisMutant ProteinsPeptidesPhosphoenolpyruvate Carboxykinase (ATP)ProteomeRecombinant Proteins

Identifiers

PMID23964026
PMCPMC3784583
OpenAlexW2122789086

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.