Evidence map›Paper›PMID 23963451›Full record

ArticleThe Journal of biological chemistry2013

Conformational plasticity of the essential membrane-associated mannosyltransferase PimA from mycobacteria.

David Giganti, Jorge Alegre-Cebollada, Saioa Urresti, David Albesa-Jové, Ane Rodrigo-Unzueta, Natalia Comino, Michael Kachala, Sonia López-Fernández, Dmitri I Svergun, Julio M Fernández and 1 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 26 citations in OpenAlex.

  1. Functional and mechanistic characterization of the phosphatidyl-Frontiers in cellular and infection microbiology · 2026
    Article
  2. Article
  3. Article
  4. Article
  5. ProteinMolecules (Basel, Switzerland) · 2021
    Article
  6. The Phosphatidyl-Journal of bacteriology · 2021
    Article
  7. Article
  8. Review
  9. Article
  10. Article
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  12. Article
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  14. Article
  15. Article
  16. Review
  17. The cell envelope glycoconjugates of Mycobacterium tuberculosis.Critical reviews in biochemistry and molecular biology
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 3 countries.

David GigantiFrom the Unidad de Biofísica, Consejo Superior de Investigaciones Científicas-Universidad del País Vasco/Euskal Herriko Unibertsitatea, Barrio Sarriena s/n, Leioa, Bizkaia 48940, Spain.
Jorge Alegre-Cebollada
Saioa Urresti
David Albesa-Jové
Ane Rodrigo-Unzueta
Natalia Comino
Michael Kachala
Sonia López-Fernández
Dmitri I Svergun
Julio M Fernández
Marcelo E Guerin
University of the Basque Country · ESColumbia University · USConsejo Superior de Investigaciones Científicas · ESDeutsches Elektronen-Synchrotron DESY · DEEuropean Molecular Biology Laboratory · DE

Funding

Single Molecule Studies of Titin ElasticityR01HL061228 · NHLBI · MAYO CLINIC COLL OF MEDICINE, ROCHESTER · PI FERNANDEZ, JULIO M · 1999 to 2017
$7.4M
Nanomechanics of the extracellular matrixR01HL066030 · NHLBI · MAYO CLINIC COLL OF MEDICINE, ROCHESTER · PI FERNANDEZ, JULIO M · 2001 to 2013
$5.0M
NHLBI NIH HHS HL61228/HL66030NHLBI NIH HHS R01 HL061228NHLBI NIH HHS R01 HL066030
6 · The paper itself

Abstract

Phosphatidyl-myo-inositol mannosyltransferase A (PimA) is an essential glycosyltransferase (GT) that initiates the biosynthetic pathway of phosphatidyl-myo-inositol mannosides, lipomannan, and lipoarabinomannan, which are key glycolipids/lipoglycans of the mycobacterial cell envelope. PimA belongs to a large family of peripheral membrane-associated GTs for which the understanding of the molecular mechanism and conformational changes that govern substrate/membrane recognition and catalysis remains a major challenge. Here we used single molecule force spectroscopy techniques to study the mechanical and conformational properties of PimA. In our studies, we engineered a polyprotein containing PimA flanked by four copies of the well characterized I27 protein, which provides an unambiguous mechanical fingerprint. We found that PimA exhibits weak mechanical stability albeit displaying β-sheet topology expected to unfold at much higher forces. Notably, PimA unfolds following heterogeneous multiple step mechanical unfolding pathways at low force akin to molten globule states. Interestingly, the ab initio low resolution envelopes obtained from small angle x-ray scattering of the unliganded PimA and the PimA·GDP complexed forms clearly demonstrate that not only the "open" and "closed" conformations of the GT-B enzyme are largely present in solution, but in addition, PimA experiences remarkable flexibility that undoubtedly corresponds to the N-terminal "Rossmann fold" domain, which has been proved to participate in protein-membrane interactions. Based on these results and on our previous experimental data, we propose a model wherein the conformational transitions are important for the mannosyltransferase to interact with the donor and acceptor substrates/membrane.

Indexed as

Protein ConformationAmino Acid SequenceBacterial ProteinsGenes, EssentialGuanosine DiphosphateMannosyltransferasesMembrane ProteinsMicroscopy, Atomic ForceModels, MolecularMolecular Sequence DataMycobacterium smegmatisProtein BindingProtein FoldingProtein Structure, SecondaryProtein Structure, TertiaryProtein UnfoldingBacterial ProteinsGuanosine DiphosphateMannosyltransferasesMembrane Proteinsphosphatidyl-myo-inositol mannosyltransferase PimA, Mycobacterium smegmatisGlycobiologyGlycolipidsGlycosyltransferasesMembrane ProteinsMycobacterium

Identifiers

PMID23963451
PMCPMC3795279
OpenAlexW1991081879

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.