Evidence map›Paper›PMID 23963167›Full record

ArticleInvestigative ophthalmology & visual science2013

Investigation of known genetic risk factors for primary open angle glaucoma in two populations of African ancestry.

Yutao Liu, Michael A Hauser, Stephen K Akafo, Xuejun Qin, Shiroh Miura, Jason R Gibson, Joshua Wheeler, Douglas E Gaasterland, Pratap Challa, Leon W Herndon and 10 more

Open access · greenAbstract read
In one paragraph

Article in Investigative ophthalmology & visual science, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 48 papers, 5 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
48citing papers in PubMed, 5 pooled it
8.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

48 citing papers in PubMed, 5 syntheses or guidelines pooled it, 83 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 8 institutions in 2 countries.

Yutao LiuDepartment of Medicine, Duke University Medical Center, Durham, North Carolina.
Michael A Hauser
Stephen K Akafo
Xuejun Qin
Shiroh Miura
Jason R Gibson
Joshua Wheeler
Douglas E Gaasterland
Pratap Challa
Leon W Herndon
International Consortium of African Ancestry REsearch in Glaucoma
Robert Ritch
Sayoko E Moroi
Louis R Pasquale
Christopher A Girkin
Donald L Budenz
Janey L Wiggs
Julia E Richards
Allison E Ashley-Koch
R Rand Allingham
Duke Medical Center · USUniversity of Michigan–Ann Arbor · USHarvard University · USMassachusetts Eye and Ear Infirmary · USNew York Eye and Ear Infirmary · USUniversity of Alabama at Birmingham · USUniversity of Ghana · GHUniversity of North Carolina at Chapel Hill · US

Funding

VISION RESEARCHP30EY005722 · NEI · DUKE UNIVERSITY · PI Vadim Y Arshavsky · 1985 to 2026
$19.3M
MOLECULAR GENETICS OF PRIMARY OPEN ANGLE GLAUCOMAR01EY011671 · NEI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI RICHARDS, JULIA E · 1998 to 2011
$5.0M
Candidate Genes for Primary Open Angle GlaucomaR01EY013315 · NEI · DUKE UNIVERSITY · PI HAUSER, MICHAEL A · 2001 to 2011
$4.1M
MOLECULAR GENETICS OF JUVENILE ONSET GLAUCOMAR01EY009580 · NEI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI RICHARDS, JULIA E · 1992 to 2005
$3.5M
Genomic Convergence in Primary Open Angle GlaucomaR01EY015543 · NEI · DUKE UNIVERSITY · PI ALLINGHAM, ROBERT RAND · 2005 to 2009
$3.4M
Genetic Etiologies of Primary Open Angle GlaucomaR01EY015872 · NEI · MASSACHUSETTS EYE AND EAR INFIRMARY · PI WIGGS, JANEY L · 2005 to 2009
$3.3M
Admixture Mapping of Glaucoma Genes in African AmericansR01EY019126 · NEI · DUKE UNIVERSITY · PI HAUSER, MICHAEL A · 2008 to 2012
$3.2M
Genetic Studies of POAG in Ghana, West AfricaR03EY014939 · NEI · DUKE UNIVERSITY · PI ALLINGHAM, ROBERT RAND · 2003 to 2005
$462k
NEI NIH HHS P30 EY005722NEI NIH HHS P30EY005722NEI NIH HHS R01 EY009580NEI NIH HHS R01 EY011671NEI NIH HHS R01EY011671NEI NIH HHS R01 EY013315NEI NIH HHS R01EY013315NEI NIH HHS R01 EY015543NEI NIH HHS R01EY015543NEI NIH HHS R01 EY015872NEI NIH HHS R01EY015872NEI NIH HHS R01 EY019126NEI NIH HHS R01EY019126NEI NIH HHS R01EY09580NEI NIH HHS R03 EY014939NEI NIH HHS R03EY014939
6 · The paper itself

Abstract

purposeMultiple genes have been associated with primary open angle glaucoma (POAG) in Caucasian populations. We now examine the association of these loci in populations of African ancestry, populations at particularly high risk for POAG.

methodsWe genotyped DNA samples from two populations: African American (1150 cases and 999 controls) and those from Ghana, West Africa (483 cases and 593 controls). Our analysis included 57 single nucleotide polymorphisms (SNPs) in five loci previously associated with POAG at the genome-wide level, including CDKN2B-AS1, TMCO1, CAV1/CAV2, chromosome 8q22 intergenic region, and SIX1/SIX6. We evaluated association in the full datasets, as well as subgroups with normal pressure glaucoma (NPG, maximum IOP ≤21 mm Hg) and high pressure glaucoma (HPG, IOP >21 mm Hg).

resultsIn African Americans, we identified an association of rs10120688 in the CDNK2B-AS1 region with POAG (P = 0.0020). Several other SNPs were nominally associated, but did not survive correction for multiple testing. In the subgroup analyses, significant associations were identified for rs10965245 (P = 0.0005) in the CDKN2B-AS1 region with HPG and rs11849906 in the SIX1/SIX6 region with NPG (P = 0.006). No significant association was identified with any loci in the Ghanaian samples.

conclusionsPOAG genetic susceptibility alleles associated in Caucasians appear to play a greatly reduced role in populations of African ancestry. Thus, the major genetic components of POAG of African origin remain to be identified. This finding underscores the critical need to pursue large-scale genome-wide association studies in this understudied, yet disproportionately affected population.

Indexed as

Genetic Predisposition to DiseaseAgedBlack or African AmericanBlack PeopleCalcium ChannelsCaveolin 1Caveolin 2FemaleGenetic Association StudiesGlaucoma, Open-AngleHomeodomain ProteinsHumansIntracellular Signaling Peptides and ProteinsMaleMembrane ProteinsMiddle AgedCalcium ChannelsCAV1 protein, humanCAV2 protein, humanCaveolin 1Caveolin 2CDKN2B antisense RNA, humanHomeodomain ProteinsIntracellular Signaling Peptides and ProteinsMembrane ProteinsRNA, Long NoncodingSIX1 protein, humanSIX6 protein, humanTMCO1 protein, humanTrans-ActivatorsAfricanAfrican AmericanassociationgeneticsPOAG

Identifiers

PMID23963167
PMCPMC3776712
OpenAlexW1983990929

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.