Evidence map›Paper›PMID 23960015›Full record

ArticleYeast (Chichester, England)2013

The role of the Saccharomyces cerevisiae lipoate protein ligase homologue, Lip3, in lipoic acid synthesis.

Fatemah A Hermes, John E Cronan

Open access · greenAbstract read
In one paragraph

Article in Yeast (Chichester, England), 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 36 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Lipoic acid attachment to proteins: stimulating new developments.Microbiology and molecular biology reviews : MMBR · 2024
    Review
  5. Article
  6. DefiningThe Journal of biological chemistry · 2020
    Article
  7. Mechanism-Driven Metabolic Engineering for Bio-Based Production of FreeFrontiers in bioengineering and biotechnology · 2020
    Article
  8. Review
  9. Functional Identification and Structural Analysis of a New Lipoate Protein Ligase inFrontiers in cellular and infection microbiology · 2020
    Article
  10. Article
  11. Protein moonlighting elucidates the essential human pathway catalyzing lipoic acid assembly on its cognate enzymes.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  12. Article
  13. Lipoic acid metabolism and mitochondrial redox regulation.The Journal of biological chemistry · 2018
    Review
  14. Article
  15. Differential diagnosis of lipoic acid synthesis defects.Journal of inherited metabolic disease · 2016
    Review
  16. Review
  17. Article
  18. Article
  19. Lipoic acid biosynthesis defects.Journal of inherited metabolic disease · 2014
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Fatemah A HermesDepartment of Microbiology, University of Illinois, Urbana, IL, USA.
John E Cronan
University of Illinois Urbana-Champaign · US

Funding

GENETIC APPROACHES TO REGULATION OF LIPID METABOLISMR01AI015650 · NIAID · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI CRONAN, JOHN E. · 1985 to 2022
$12.0M
Cellular and Molecular Biology Training GrantT32GM007283 · NIGMS · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI MORRISSEY, JAMES H. · 1985 to 2011
$4.7M
GENETIC APPROACHES TO REGULATION OF LIPID METABOLISMR37AI015650 · NIAID · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI CRONAN, JOHN E. · 1994 to 2003
$1.8M
NIAID NIH HHS AI15650NIAID NIH HHS R01 AI015650NIAID NIH HHS R37 AI015650NIGMS NIH HHS T32 GM007283NIGMS NIH HHS T32 GM7283
6 · The paper itself

Abstract

The covalent attachment of lipoate to the lipoyl domains (LDs) of the central metabolism enzymes pyruvate dehydrogenase (PDH) and oxoglutarate dehydrogenase (OGDH) is essential for their activation and thus for respiratory growth in Saccharomyces cerevisiae. A third lipoate-dependent enzyme system, the glycine cleavage system (GCV), is required for utilization of glycine as a nitrogen source. Lipoate is synthesized by extraction of its precursor, octanoyl-acyl carrier protein (ACP), from the pool of fatty acid biosynthetic intermediates. Alternatively, lipoate is salvaged from previously modified proteins or from growth medium by lipoate protein ligases (Lpls). The first Lpl to be characterized, LplA of Escherichia coli, catalyses two partial reactions: activation of the acyl chain by formation of acyl-AMP, followed by transfer of the acyl chain to lipoyl domains (LDs). There is a surprising diversity within the Lpl family of enzymes, several of which catalyse reactions other than ligation reactions. For example, the Bacillus subtilis Lpl homologue LipM is an octanoyltransferase that transfers the octanoyl moiety from octanoyl-ACP to GCV. Another B. subtilis Lpl homologue, LipL, transfers octanoate from octanoyl-GCV to other LDs in an amido-transfer reaction. Study of eukaryotic Lpls has lagged behind studies of the bacterial enzymes. We report that the Lip3 Lpl homologue of the yeast S. cerevisiae has octanoyl-CoA-protein transferase activity, and discuss implications of this activity on the physiological role of Lip3 in lipoate synthesis.

Indexed as

AcyltransferasesCoenzyme A LigasesEscherichia coliGene DeletionKetoglutarate Dehydrogenase ComplexPeptide SynthasesPyruvate Dehydrogenase ComplexSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsThioctic AcidAcyltransferasesCoenzyme A LigasesKetoglutarate Dehydrogenase ComplexLIP2 protein, S cerevisiaelipoate-protein ligasePeptide SynthasesPyruvate Dehydrogenase ComplexSaccharomyces cerevisiae ProteinsThioctic Acidlipoate protein ligaselipoic acidmitochondrial integrityoctanoyl-CoAprotein transferaserespirationtricarboxylic acid cycle

Identifiers

PMID23960015
PMCPMC3806487
OpenAlexW1766633605

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.