Evidence map›Paper›PMID 23959679›Full record

ArticleThe Journal of physiology2013

Effects of optional structural elements, including two alternative amino termini and a new splicing cassette IV, on the function of the sodium-bicarbonate cotransporter NBCn1 (SLC4A7).

Ying Liu, Xue Qin, Deng-Ke Wang, Yi-Min Guo, Harindarpal S Gill, Nathan Morris, Mark D Parker, Li-Ming Chen, Walter F Boron

Open access · greenAbstract read
In one paragraph

Article in The Journal of physiology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.0field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 20 citations in OpenAlex.

  1. Review
  2. Loss of NaActa physiologica (Oxford, England) · 2025
    Article
  3. The role of NaPflugers Archiv : European journal of physiology · 2024
    Review
  4. Article
  5. Understanding the Physiological Role of Electroneutral NaPharmaceuticals (Basel, Switzerland) · 2022
    Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Functions of intrinsic disorder in transmembrane proteins.Cellular and molecular life sciences : CMLS · 2017
    Review
  11. Article
  12. Article
  13. Review
  14. Review
  15. Article
  16. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Ying LiuL.-M. Chen: Department of Biophysics and Molecular Physiology, Key Laboratory of Molecular Biophysics of Ministry of Education, Huazhong University of Science & Technology School of Life Science and Technology, 1037 Luoyu Rd, Wuhan, Hubei, China 430074. liming.chen@mail.hust.edu.cn.
Xue Qin
Deng-Ke Wang
Yi-Min Guo
Harindarpal S Gill
Nathan Morris
Mark D Parker
Li-Ming Chen
Walter F Boron
Huazhong University of Science and Technology · CNCase Western Reserve University · USUniversity School · US

Funding

PH REGULATION OF EXCITABLE INVERTEBRATE CELLSR01NS018400 · NINDS · YALE UNIVERSITY · PI BORON, WALTER F · 1985 to 2012
$5.1M
Structure-function studies of the dimerization of the N-terminal domain of NBCe1-K01DK082646 · NIDDK · GEORGE WASHINGTON UNIVERSITY · PI GILL, HARRY SINGH · 2009 to 2014
$704k
NBCe1 and n1: Crystal Structure DeterminationF32DK075258 · NIDDK · YALE UNIVERSITY · PI GILL, HARRY SINGH · 2006 to 2006
$54k
NIDDK NIH HHS F32DK075258NIDDK NIH HHS K01 DK082646NIDDK NIH HHS K01DK082646NINDS NIH HHS NS18400
6 · The paper itself

Abstract

The SLC4A7 gene encodes the electroneutral sodium/HCO3 cotransporter NBCn1, which plays important physiological and pathophysiological roles in many cell types. Previous work identified six NBCn1 variants differing in the sequence of the extreme N terminus--MEAD in rat only, MERF in human only--as well as in the optional inclusion of cassettes I, II, and III. Earlier work also left open the question of whether optional structural elements (OSEs) affect surface abundance or intrinsic (per-molecule) transport activity. Here, we demonstrate for the first time that SLC4A7 from one species can express both MEAD- and MERF-NBCn1. We also identify a novel cassette IV of 20 aa, and extend by 10 the number of full-length NBCn1 variants. The alternative N termini and four cassettes could theoretically produce 32 major variants. Moreover, we identify a group of cDNAs predicted to encode just the cytosolic N-terminal domain (Nt) of NBCn1. A combination of electrophysiology and biotinylation shows that the OSEs can affect surface abundance and intrinsic HCO3(-) transport activity of NBCn1, as expressed in Xenopus oocytes. Specifically, MEAD tends to increase whereas novel cassette IV reduces surface abundance. Cassettes II, III and novel cassette IV all appear to increase the intrinsic activity of NBCn1.

Indexed as

Alternative SplicingAnimalsCell MembraneHumansMiceProtein Structure, TertiaryProtein TransportSodium-Bicarbonate SymportersXenopusSLC4A7 protein, humanSlc4a7 protein, mouseSodium-Bicarbonate Symporters

Identifiers

PMID23959679
PMCPMC3810804
OpenAlexW2079335472

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.