ArticleDatabase : the journal of biological databases and curation2013
GnpIS: an information system to integrate genetic and genomic data from plants and fungi.
Article in Database : the journal of biological databases and curation, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
27 citing papers in PubMed.
- Genotype and phenotype data standardization, utilization and integration in the big data era for agricultural sciences.Database : the journal of biological databases and curation · 2023Review
- Toward a data infrastructure for the Plant Cell Atlas.Plant physiology · 2023Review
- eQTLs are key players in the integration of genomic and transcriptomic data for phenotype prediction.BMC genomics · 2022Article
- Challenges for FAIR-compliant description and comparison of crop phenotype data with standardized controlled vocabularies.Database : the journal of biological databases and curation · 2021Article
- The GenTree Platform: growth traits and tree-level environmental data in 12 European forest tree species.GigaScience · 2021Article
- Enabling reusability of plant phenomic datasets with MIAPPE 1.1.The New phytologist · 2020Article
- Gene expression predictions and networks in natural populations supports the omnigenic theory.BMC genomics · 2020Article
- The GenTree Dendroecological Collection, tree-ring and wood density data from seven tree species across Europe.Scientific data · 2020Article
- SHiNeMaS: a web tool dedicated to seed lots history, phenotyping and cultural practices.Plant methods · 2020Article
- Genomic prediction of maize yield across European environmental conditions.Nature genetics · 2019Article
- Applying FAIR Principles to Plant Phenotypic Data Management in GnpIS.Plant phenomics (Washington, D.C.) · 2019Article
- Dealing with multi-source and multi-scale information in plant phenomics: the ontology-driven Phenotyping Hybrid Information System.The New phytologist · 2019Article
- RepetDB: a unified resource for transposable element references.Mobile DNA · 2019Article
- Modeling Crop Genetic Resources Phenotyping Information Systems.Frontiers in plant science · 2019Article
- Accuracy of RNAseq based SNP discovery and genotyping in Populusnigra.BMC genomics · 2018Article
- Linking the International Wheat Genome Sequencing Consortium bread wheat reference genome sequence to wheat genetic and phenomic data.Genome biology · 2018Article
- Phenotypic trait variation measured on European genetic trials of Fagus sylvatica L.Scientific data · 2018Article
- Unlocking the potential of plant phenotyping data through integration and data-driven approaches.Current opinion in systems biology · 2017Review
- Knowledge Discovery in Biological Databases for Revealing Candidate Genes Linked to Complex Phenotypes.Journal of integrative bioinformatics · 2017Review
- Introducing the Brassica Information Portal: Towards integrating genotypic and phenotypic Brassica crop data.F1000Research · 2017Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
17 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Data integration is a key challenge for modern bioinformatics. It aims to provide biologists with tools to explore relevant data produced by different studies. Large-scale international projects can generate lots of heterogeneous and unrelated data. The challenge is to integrate this information with other publicly available data. Nucleotide sequencing throughput has been improved with new technologies; this increases the need for powerful information systems able to store, manage and explore data. GnpIS is a multispecies integrative information system dedicated to plant and fungi pests. It bridges genetic and genomic data, allowing researchers access to both genetic information (e.g. genetic maps, quantitative trait loci, markers, single nucleotide polymorphisms, germplasms and genotypes) and genomic data (e.g. genomic sequences, physical maps, genome annotation and expression data) for species of agronomical interest. GnpIS is used by both large international projects and plant science departments at the French National Institute for Agricultural Research. Here, we illustrate its use. Database URL: http://urgi.versailles.inra.fr/gnpis.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.