Evidence map›Paper›PMID 23957671›Full record

ArticleGenome2013

A comparative approach expands the protein-protein interaction node of the immune receptor XA21 in wheat and rice.

Baoju Yang, Randy Ruan, Dario Cantu, Xiaodong Wang, Wanquan Ji, Pamela C Ronald, Jorge Dubcovsky

Open access · greenAbstract read
In one paragraph

Article in Genome, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 19 citations in OpenAlex.

  1. Review
  2. Article
  3. Interaction ofFrontiers in plant science · 2021
    Article
  4. Article
  5. Review
  6. Article
  7. Review
  8. TaXA21-A1 on chromosome 5AL is associated with resistance to multiple pests in wheat.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2016
    Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Baoju YangState Key Laboratory of Crop Stress Biology for Arid Areas/College of Agronomy, Northwest A&F University, 3 Taicheng Road, Yangling, Shaanxi 712100, China.
Randy Ruan
Dario Cantu
Xiaodong Wang
Wanquan Ji
Pamela C Ronald
Jorge Dubcovsky
University of California, Davis · USHoward Hughes Medical Institute · US

Funding

Howard Hughes Medical Institute
6 · The paper itself

Abstract

The rice (Oryza sativa) OsXA21 receptor kinase is a well-studied immune receptor that initiates a signal transduction pathway leading to resistance to Xanthomonas oryzae pv. oryzae. Two homologs of OsXA21 were identified in wheat (Triticum aestivum): TaXA21-like1 located in a syntenic region with OsXA21, and TaXA21-like2 located in a nonsyntenic region. Proteins encoded by these two wheat genes interact with four wheat orthologs of known OsXA21 interactors. In this study, we screened a wheat yeast-two-hybrid (Y2H) library using the cytosolic portion of TaXA21-like1 as bait to identify additional interactors. Using full-length T. aestivum and T. monococcum proteins and Y2H assays we identified three novel TaXA21-like1 interactors (TaARG, TaPR2, TmSKL1) plus one previously known in rice (TaSGT1). An additional full-length wheat protein (TaCIPK14) interacted with TaXA21-like2 and OsXA21 but not with TaXA21-like1. The interactions of TaXA21-like1 with TmSKL1 and TaSGT1 were also observed in rice protoplasts using bimolecular fluorescence complementation assays. We then cloned the rice homologs of the novel wheat interactors and confirmed that they all interact with OsXA21. This last result suggests that interspecific comparative interactome analyses can be used not only to transfer known interactions from rice to wheat, but also to identify novel interactions in rice.

Indexed as

Amino Acid SequenceCloning, MolecularGene LibraryHSP90 Heat-Shock ProteinsMolecular Sequence DataOryzaPlant ProteinsProtein Interaction MapsProtein Serine-Threonine KinasesProtoplastsSequence Homology, Amino AcidTriticumTwo-Hybrid System TechniquesHSP90 Heat-Shock ProteinsPlant ProteinsProtein Serine-Threonine KinasesXa21 protein, Oryza sativa

Identifiers

PMID23957671
PMCPMC4873545
OpenAlexW2332463016

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.