Evidence map›Paper›PMID 23955804›Full record

ArticleBiotechnology and bioengineering2014

A high-throughput screen for antibiotic drug discovery.

Thomas C Scanlon, Sarah M Dostal, Karl E Griswold

Erratum issued Registry-linked trialAbstract read
In one paragraph

Article in Biotechnology and bioengineering, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. It is linked to trial NCT06924697 (Effect of Glucagon-like Peptide-1), which is not on this map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT06924697 naenrolling by invitationstarted 2025, after this paper: background citation

Effect of Glucagon-like Peptide-1 (GLP-1) Receptor Agonist Stimulation on Smoking Consumption in Type 2 Diabetes Patients: Study Protocol of a Randomized, Parallel -Controlled Clinical Trial

Ran2025Enrolled46Registered outcomes6Posted comparisons0ConditionsDiabetes Mellitus, Type 2, Nicotine Dependence, CigarettesArmsApplication of GLP-1RAs drugs, DPP-4i group
Open the trial in the graph
3 · Its place in the literature

Who cites it

38 citing papers in PubMed.

  1. Article
  2. Reprogrammed SimCells for antimicrobial therapy.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  3. Review
  4. Article
  5. Review
  6. A screening setup to streamlineMaterials today. Bio · 2025
    Article
  7. Article
  8. Article
  9. Article
  10. Animal Microbiomes as a Source of Novel Antibiotic-Producing Strains.International journal of molecular sciences · 2023
    Review
  11. Droplet-Based Microfluidics: Applications in Pharmaceuticals.Pharmaceuticals (Basel, Switzerland) · 2023
    Review
  12. Review
  13. Droplet Microfluidics for Microbial Biotechnology.Advances in biochemical engineering/biotechnology · 2022
    Article
  14. Review
  15. Review
  16. Droplet Microfluidics and Directed Evolution of Enzymes: An Intertwined Journey.Angewandte Chemie (International ed. in English) · 2021
    Review
  17. Article
  18. Engineering Selectively Targeting Antimicrobial Peptides.Annual review of biomedical engineering · 2021
    Review
  19. Review
  20. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

3 authors.

Thomas C ScanlonThayer School of Engineering, Dartmouth College, Hanover, New Hampshire, 03755.
Sarah M Dostal
Karl E Griswold

Funding

Computationally optimized anti-staphylococcal biotherapeuticsR21AI098122 · NIAID · DARTMOUTH COLLEGE · PI BAILEY-KELLOGG, CHRIS, DEGROOT, ANNE SEARLS · 2012 to 2013
$451k
Molecular Engineering of Humanized Anti-Staphlococcal Lytic EnzymesR21AI094391 · NIAID · DARTMOUTH COLLEGE · PI GRISWOLD, KARL E · 2011 to 2012
$435k
NIAID NIH HHS 1R21AI094391NIAID NIH HHS 1R21AI098122NIAID NIH HHS R21 AI094391NIAID NIH HHS R21 AI098122
6 · The paper itself

Abstract

We describe an ultra-high-throughput screening platform enabling discovery and/or engineering of natural product antibiotics. The methodology involves creation of hydrogel-in-oil emulsions in which recombinant microorganisms are co-emulsified with bacterial pathogens; antibiotic activity is assayed by use of a fluorescent viability dye. We have successfully utilized both bulk emulsification and microfluidic technology for the generation of hydrogel microdroplets that are size-compatible with conventional flow cytometry. Hydrogel droplets are ∼25 pL in volume, and can be synthesized and sorted at rates exceeding 3,000 drops/s. Using this technique, we have achieved screening throughputs exceeding 5 million clones/day. Proof-of-concept experiments demonstrate efficient selection of antibiotic-secreting yeast from a vast excess of negative controls. In addition, we have successfully used this technique to screen a metagenomic library for secreted antibiotics that kill the human pathogen Staphylococcus aureus. Our results establish the practical utility of the screening platform, and we anticipate that the accessible nature of our methods will enable others seeking to identify and engineer the next generation of antibacterial biomolecules.

Indexed as

Anti-Bacterial AgentsAntibiosisBacteriaBiological ProductsDrug Evaluation, PreclinicalFungiHigh-Throughput Screening AssaysHydrogel, Polyethylene Glycol DimethacrylateAnti-Bacterial AgentsBiological ProductsHydrogel, Polyethylene Glycol Dimethacrylateantibioticsdrug discoveryhigh-throughput screeningin vitro compartmentalizationmetagenomicsmicrofluidics

Identifiers

PMID23955804
PMCPMC4085149

What OpenQuestion holds

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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.