Evidence map›Paper›PMID 23955339›Full record

ArticleThe Journal of biological chemistry2013

Functional inositol 1,4,5-trisphosphate receptors assembled from concatenated homo- and heteromeric subunits.

Kamil J Alzayady, Larry E Wagner, Rahul Chandrasekhar, Alina Monteagudo, Ronald Godiska, Gregory G Tall, Suresh K Joseph, David I Yule

Abstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed.

  1. Article
  2. Article
  3. Location, location, and activation of a channel by calcium.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. All three IPScience signaling · 2018
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Cardiac inositol 1,4,5-trisphosphate receptors.Biochimica et biophysica acta. Molecular cell research · 2017
    Review
  16. On the dynamical structure of calcium oscillations.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  17. Review
  18. IP3 receptors: Take four IP3 to open.Science signaling · 2016
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Kamil J AlzayadyFrom the Department of Pharmacology and Physiology, University of Rochester, Rochester, New York 14642.
Larry E Wagner
Rahul Chandrasekhar
Alina Monteagudo
Ronald Godiska
Gregory G Tall
Suresh K Joseph
David I Yule

Funding

[Ca2+]i and Secretory Dynamics in Parotid Acinar CellsR01DE014756 · NIDCR · UNIVERSITY OF ROCHESTER · PI David I Yule · 2002 to 2026
$9.9M
An experimental/computational approach for understanding salivary fluid secretionR01DE019245 · NIDCR · UNIVERSITY OF ROCHESTER · PI David I Yule · 2008 to 2026
$9.7M
Training Program in Oral ScienceT90DE021985 · NIDCR · UNIVERSITY OF ROCHESTER · PI OVITT, CATHERINE, YULE, DAVID I · 2011 to 2021
$5.6M
[Ca2+]i and Secretory Dynamics in Parotid Acinar CellsR56DE014756 · NIDCR · UNIVERSITY OF ROCHESTER · PI YULE, DAVID I · 2007 to 2007
$395k
Mini-Chromosome and Fluorescent Proteins for Expression of Protein ComplexesR43HG006084 · NHGRI · LUCIGEN CORPORATION · PI GODISKA, RONALD · 2012 to 2012
$231k
NHGRI NIH HHS R43 HG006084NIDCR NIH HHS DE14756NIDCR NIH HHS DE19245NIDCR NIH HHS R01 DE014756NIDCR NIH HHS R01 DE019245NIDCR NIH HHS R56 DE014756NIDCR NIH HHS T90 DE021985
6 · The paper itself

Abstract

Vertebrate genomes code for three subtypes of inositol 1,4,5-trisphosphate (IP3) receptors (IP3R1, -2, and -3). Individual IP3R monomers are assembled to form homo- and heterotetrameric channels that mediate Ca(2+) release from intracellular stores. IP3R subtypes are regulated differentially by IP3, Ca(2+), ATP, and various other cellular factors and events. IP3R subtypes are seldom expressed in isolation in individual cell types, and cells often express different complements of IP3R subtypes. When multiple subtypes of IP3R are co-expressed, the subunit composition of channels cannot be specifically defined. Thus, how the subunit composition of heterotetrameric IP3R channels contributes to shaping the spatio-temporal properties of IP3-mediated Ca(2+) signals has been difficult to evaluate. To address this question, we created concatenated IP3R linked by short flexible linkers. Dimeric constructs were expressed in DT40-3KO cells, an IP3R null cell line. The dimeric proteins were localized to membranes, ran as intact dimeric proteins on SDS-PAGE, and migrated as an ∼1100-kDa band on blue native gels exactly as wild type IP3R. Importantly, IP3R channels formed from concatenated dimers were fully functional as indicated by agonist-induced Ca(2+) release. Using single channel "on-nucleus" patch clamp, the channels assembled from homodimers were essentially indistinguishable from those formed by the wild type receptor. However, the activity of channels formed from concatenated IP3R1 and IP3R2 heterodimers was dominated by IP3R2 in terms of the characteristics of regulation by ATP. These studies provide the first insight into the regulation of heterotetrameric IP3R of defined composition. Importantly, the results indicate that the properties of these channels are not simply a blend of those of the constituent IP3R monomers.

Indexed as

Protein MultimerizationAnimalsCalciumCell LineCell MembraneCytosolHumansImmunoblottingInositol 1,4,5-Trisphosphate ReceptorsIon Channel GatingMembrane PotentialsMiceMutationPatch-Clamp TechniquesProtein IsoformsProtein SubunitsCalciumInositol 1,4,5-Trisphosphate ReceptorsProtein IsoformsProtein SubunitsTissue ExtractsATPCalcium ImagingCalcium Intracellular ReleaseCalcium SignalingInositol 1,4,5-Trisphosphate ReceptorSignal TransductionSingle Channel Recording

Identifiers

PMID23955339
PMCPMC3795275

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.