Evidence map›Paper›PMID 23950928›Full record

ArticlePloS one2013

Link between epigenomic alterations and genome-wide aberrant transcriptional response to allergen in dendritic cells conveying maternal asthma risk.

Lyudmila Mikhaylova, Yiming Zhang, Lester Kobzik, Alexey V Fedulov

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 35 citations in OpenAlex.

  1. Clinical markers of asthma and IgE assessed in parents before conception predict asthma and hayfever in the offspring.Clinical and experimental allergy : journal of the British Society for Allergy and Clinical Immunology · 2017
    Trial
  2. Article
  3. Article
  4. Review
  5. Article
  6. The role of epigenetics in multi-generational transmission of asthma: An NIAID workshop report-based narrative review.Clinical and experimental allergy : journal of the British Society for Allergy and Clinical Immunology · 2022
    Review
  7. Review
  8. Article
  9. Review
  10. Article
  11. Article
  12. Review
  13. Review
  14. Review
  15. Article
  16. Article
  17. Transgenerational transmission of asthma risk after exposure to environmental particles during pregnancy.American journal of physiology. Lung cellular and molecular physiology · 2017
    Article
  18. Review
  19. Genetics of allergic diseases.Immunology and allergy clinics of North America · 2015
    Review
  20. Maternal influences over offspring allergic responses.Current allergy and asthma reports · 2015
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Lyudmila MikhaylovaDivision of Pulmonary and Critical Care Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, Massachusetts, USA.
Yiming Zhang
Lester Kobzik
Alexey V Fedulov
Harvard University · USBrigham and Women's Hospital · US

Funding

Inhaled environmental particles, pregnancy and neonatal allergyR00ES015425 · NIEHS · BRIGHAM AND WOMEN'S HOSPITAL · PI FEDULOV, ALEXEY V · 2010 to 2012
$747k
Inhaled environmental particles, pregnancy and neonatal allergyK99ES015425 · NIEHS · HARVARD SCHOOL OF PUBLIC HEALTH · PI FEDULOV, ALEXEY V · 2007 to 2008
$180k
NIEHS NIH HHS ES015425NIEHS NIH HHS K99 ES015425NIEHS NIH HHS R00 ES015425
6 · The paper itself

Abstract

We investigated the link between epigenome-wide methylation aberrations at birth and genomic transcriptional changes upon allergen sensitization that occur in the neonatal dendritic cells (DC) due to maternal asthma. We previously demonstrated that neonates of asthmatic mothers are born with a functional skew in splenic DCs that can be seen even in allergen-naïve pups and can convey allergy responses to normal recipients. However, minimal-to-no transcriptional or phenotypic changes were found to explain this alteration. Here we provide in-depth analysis of genome-wide DNA methylation profiles and RNA transcriptional (microarray) profiles before and after allergen sensitization. We identified differentially methylated and differentially expressed loci and performed manually-curated matching of methylation status of the key regulatory sequences (promoters and CpG islands) to expression of their respective transcripts before and after sensitization. We found that while allergen-naive DCs from asthma-at-risk neonates have minimal transcriptional change compared to controls, the methylation changes are extensive. The substantial transcriptional change only becomes evident upon allergen sensitization, when it occurs in multiple genes with the pre-existing epigenetic alterations. We demonstrate that maternal asthma leads to both hyper- and hypomethylation in neonatal DCs, and that both types of events at various loci significantly overlap with transcriptional responses to allergen. Pathway analysis indicates that approximately 1/2 of differentially expressed and differentially methylated genes directly interact in known networks involved in allergy and asthma processes. We conclude that congenital epigenetic changes in DCs are strongly linked to altered transcriptional responses to allergen and to early-life asthma origin. The findings are consistent with the emerging paradigm that asthma is a disease with underlying epigenetic changes.

Indexed as

Epigenesis, GeneticTranscription, GeneticAllergensAnimalsAsthmaCpG IslandsDendritic CellsDNA MethylationEpigenomicsFemaleGene Expression ProfilingGene Expression RegulationGene Regulatory NetworksGenome-Wide Association StudyHumansInfant, NewbornAllergens

Identifiers

PMID23950928
PMCPMC3741290
OpenAlexW2112038968

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.