ArticlePloS one2013
Comparative genome analysis and phylogenetic relationship of order Liliales insight from the complete plastid genome sequences of two Lilies (Lilium longiflorum and Alstroemeria aurea).
Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.
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28 citing papers in PubMed, 57 citations in OpenAlex.
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- Comparative Chloroplast Genomics of Fritillaria (Liliaceae), Inferences for Phylogenetic Relationships between Fritillaria and Lilium and Plastome Evolution.Plants (Basel, Switzerland) · 2020Article
- The complete mitogenome sequence of the coral lily (Open life sciences · 2020Article
- Comparative analysis of cp genome ofSaudi journal of biological sciences · 2020Article
- The complete chloroplast genome sequence ofMitochondrial DNA. Part B, Resources · 2019Article
- Molecular phylogenetics and historical biogeography of the tribe Lilieae (Liliaceae): bi-directional dispersal between biodiversity hotspots in Eurasia.Annals of botany · 2018Article
- The Chloroplast Genome ofMolecules (Basel, Switzerland) · 2018Article
- Application of Chloroplast Phylogenomics to Resolve Species Relationships Within the Plant Genus Amaranthus.Journal of molecular evolution · 2018Article
- Characterization of the chloroplast genome of a rare species in China,Mitochondrial DNA. Part B, Resources · 2018Article
- Chloroplast genomes of Byrsonima species (Malpighiaceae): comparative analysis and screening of high divergence sequences.Scientific reports · 2018Article
- Comparative analyses of plastid genomes from fourteen Cornales species: inferences for phylogenetic relationships and genome evolution.BMC genomics · 2017Article
- Identification of differentially expressed genes in flower, leaf and bulb scale of Lilium oriental hybrid 'Sorbonne' and putative control network for scent genes.BMC genomics · 2017Article
- Complete chloroplast genome sequences of Lilium: insights into evolutionary dynamics and phylogenetic analyses.Scientific reports · 2017Article
- Chloroplast Genomic Resource of Paris for Species Discrimination.Scientific reports · 2017Article
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2 authors at 1 institution in 1 country.
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No grant is acknowledged in the PubMed record.
Abstract
Monocots are one of the most diverse, successful and economically important clades of angiosperms. We attempt to analyse the complete plastid genome sequences of two lilies and their lengths were 152,793bp in Lilium longiflorum (Liliaceae) and 155,510bp in Alstroemeria aurea (Alstroemeriaceae). Phylogenetic analyses were performed for 28 taxa including major lineages of monocots using the sequences of 79 plastid genes for clarifying the phylogenetic relationship of the order Liliales. The sister relationship of Liliales and Asparagales-commelinids was improved with high resolution. Comparative analyses of inter-familial and inter-specific sequence variation were also carried out among three families of Liliaceae, Smilacaceae, and Alstroemeriaceae, and between two Lilium species of L. longflorum and L. superbum. Gene content and order were conserved in the order Liliales except infA loss in Smilax and Alstroemeria. IR boundaries were similar in IRa, however, IRb showed different extension patterns as JLB of Smilax and JSB in Alstroemeria. Ka/Ks ratio was high in matK among the pair-wise comparison of three families and the most variable genes were psaJ, ycf1, rpl32, rpl22, matK, and ccsA among the three families and rps15, rpoA, matK, and ndhF between Lilium.
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