Evidence map›Paper›PMID 23950152›Full record

ArticleInvestigative ophthalmology & visual science2013

Prevalence of mutations in eyeGENE probands with a diagnosis of autosomal dominant retinitis pigmentosa.

Lori S Sullivan, Sara J Bowne, Melissa J Reeves, Delphine Blain, Kerry Goetz, Vida Ndifor, Sally Vitez, Xinjing Wang, Santa J Tumminia, Stephen P Daiger

Registry-linked trialOpen access · hybridAbstract readComparative Study
In one paragraph

Article in Investigative ophthalmology & visual science, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT00378742 (National Ophthalmic Genotyping and Phenotyping Network Stage 1 - Creation of DNA Repository for Inherited Ophthalmic Diseases), which is not on this map. Cited by 53 papers.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT00378742 completednot on this map

National Ophthalmic Genotyping and Phenotyping Network Stage 1 - Creation of DNA Repository for Inherited Ophthalmic Diseases

TypeobservationalSponsorNational Eye Institute (NEI)Ran2006 to 2015Enrolled6,618ConditionsRetinitis Pigmentosa, Inherited Ophthalmic Diseases
3 · Its place in the literature

Who cites it

53 citing papers in PubMed, 74 citations in OpenAlex.

  1. Trial
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  8. Review
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  10. Review
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  12. Compound dominant-null heterozygosity in a family withAmerican journal of ophthalmology case reports · 2022
    Article
  13. Article
  14. Article
  15. Zebrafish models of inherited retinal dystrophies.Journal of translational genetics and genomics · 2022
    Article
  16. Article
  17. Article
  18. Observational
  19. Article
  20. Genotype-Phenotype Analysis ofFrontiers in genetics · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Lori S SullivanHuman Genetics Center, University of Texas Health Science Center at Houston, Houston, Texas.
Sara J Bowne
Melissa J Reeves
Delphine Blain
Kerry Goetz
Vida Ndifor
Sally Vitez
Xinjing Wang
Santa J Tumminia
Stephen P Daiger
National Institutes of Health · USThe University of Texas Health Science Center at Houston · USNational Eye Institute · US

Funding

National Ophthalmic Disease Genotyping and Phenotyping Network - eyeGENEZICEY000478 · NEI · NATIONAL EYE INSTITUTE · PI GOETZ, KERRY · 2009 to 2025
$14.8M
Genomic analysis in genes responsible for eye abnormalities in patientsZIAEY000483 · NEI · NATIONAL EYE INSTITUTE · PI WANG, XINJING · 2009 to 2016
$5.2M
DNA LINKAGE STUDIES OF DEGENERATIVE RETINAL DISEASESR01EY007142 · NEI · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI DAIGER, STEPHEN P · 1989 to 2017
$4.1M
Ophthalmic DNA Diagnostic Testing ServiceZIDEY000468 · NEI · NATIONAL EYE INSTITUTE · PI WANG, XINJING · 2009 to 2014
$2.8M
NEI NIH HHS EY007142NEI NIH HHS R01 EY007142PHS HHS HHS-N-260-2007-00001-C
6 · The paper itself

Abstract

purposeTo screen samples from patients with presumed autosomal dominant retinitis pigmentosa (adRP) for mutations in 12 disease genes as a contribution to the research and treatment goals of the National Ophthalmic Disease Genotyping and Phenotyping Network (eyeGENE).

methodsDNA samples were obtained from eyeGENE. A total of 170 probands with an intake diagnosis of adRP were tested through enrollment in eyeGENE. The 10 most common genes causing adRP (IMPDH1, KLHL7, NR2E3, PRPF3/RP18, PRPF31/RP11, PRPF8/RP13, PRPH2/RDS, RHO, RP1, and TOPORS) were chosen for PCR-based dideoxy sequencing, along with the two X-linked RP genes, RPGR and RP2. RHO, PRPH2, PRPF31, RPGR, and RP2 were completely sequenced, while only mutation hotspots in the other genes were analyzed.

resultsDisease-causing mutations were identified in 52% of the probands. The frequencies of disease-causing mutations in the 12 genes were consistent with previous studies.

conclusionsThe Laboratory for Molecular Diagnosis of Inherited Eye Disease at the University of Texas in Houston has thus far received DNA samples from 170 families with a diagnosis of adRP from the eyeGENE Network. Disease-causing mutations in autosomal genes were identified in 48% (81/170) of these families while mutations in X-linked genes accounted for an additional 4% (7/170). Of the 55 distinct mutations detected, 19 (33%) have not been previously reported. All diagnostic results were returned by eyeGENE to participating patients via their referring clinician. These genotyped samples along with their corresponding phenotypic information are also available to researchers who may request access to them for further study of these ophthalmic disorders. (ClinicalTrials.gov number, NCT00378742.).

Indexed as

Genetic Predisposition to DiseaseMutationAdultDNAEye ProteinsFemaleGenes, DominantGenes, X-LinkedGenotypeHumansMalePedigreePhenotypePolymerase Chain ReactionRetinitis PigmentosaDNAEye ProteinsDNA sequencingeyeGENEinherited retinal diseasesmutation prevalencesretinitis pigmentosa

Identifiers

PMID23950152
PMCPMC3778873
OpenAlexW2053091835

What OpenQuestion holds

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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.