Evidence map›Paper›PMID 23949966›Full record

ArticleAmerican journal of medical genetics. Part A2013

Search for genetic modifiers of IRF6 and genotype-phenotype correlations in Van der Woude and popliteal pterygium syndromes.

Elizabeth J Leslie, Jennifer L Mancuso, Brian C Schutte, Margaret E Cooper, Kate M Durda, Jamie L'Heureux, Theresa M Zucchero, Mary L Marazita, Jeffrey C Murray

Abstract read
In one paragraph

Article in American journal of medical genetics. Part A, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 26 citations in OpenAlex.

  1. Review
  2. Review
  3. Neural crest and periderm-specific requirements ofbioRxiv : the preprint server for biology · 2024
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  5. Article
  6. Article
  7. AnDevelopment (Cambridge, England) · 2020
    Article
  8. Article
  9. Article
  10. Article
  11. [Clinical and genetic features of Chinese kindreds with Van der Woude syndrome caused by interferon regulatory factor 6 mutation].Hua xi kou qiang yi xue za zhi = Huaxi kouqiang yixue zazhi = West China journal of stomatology · 2018
    Article
  12. Review
  13. Article
  14. Sonic hedgehog regulation ofDevelopment (Cambridge, England) · 2017
    Article
  15. The prevalence, penetrance, and expressivity of etiologicMolecular genetics & genomic medicine · 2017
    Article
  16. Toward an orofacial gene regulatory network.Developmental dynamics : an official publication of the American Association of Anatomists · 2016
    Review
  17. Article
  18. Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Elizabeth J Leslie *Department of Pediatrics, University of Iowa, Iowa City, IA.
Jennifer L Mancuso *Department of Medical Genetics, Mayo Clinic, Rochester, MN.
Brian C SchutteDepartments of Microbiology and Molecular Genetics, Pediatrics and Human Development, Michigan State University, East Lansing, MI.
Margaret E CooperCenter for Craniofacial and Dental Genetics, Department of Oral Biology, School of Dental Medicine, Department of Human Genetics, Graduate School of Public Health, University of Pittsburgh, Pittsburgh, PA.
Kate M DurdaDepartment of Pediatrics, University of Iowa, Iowa City, IA.
Jamie L'HeureuxDepartment of Pediatrics, University of Iowa, Iowa City, IA.
Theresa M ZuccheroDepartment of Pediatrics, University of Iowa, Iowa City, IA.
Mary L MarazitaCenter for Craniofacial and Dental Genetics, Department of Oral Biology, School of Dental Medicine, Department of Human Genetics, Graduate School of Public Health, University of Pittsburgh, Pittsburgh, PA.
Jeffrey C MurrayDepartment of Pediatrics, University of Iowa, Iowa City, IA.
University of Iowa · USUniversity of Pittsburgh · USMayo Clinic · USMichigan State University · US

Funding

Pulmonary Toxicology Facility CoreP30ES005605 · NIEHS · UNIVERSITY OF IOWA · PI Brandi Janssen · 1990 to 2026
$40.5M
Extending the Phenotype of Nonsyndromic Orofacial CleftsR01DE016148 · NIDCR · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI MARAZITA, MARY L., WEINBERG, SETH M · 2004 to 2018
$19.7M
FaceBase Management and Coordination HubU01DE020057 · NIDCR · UNIVERSITY OF IOWA · PI MARAZITA, MARY L., MURRAY, JEFFREY C · 2009 to 2014
$8.9M
Molecular Genetic Epidemiology of Cleft Lip and PalateR37DE008559 · NIDCR · UNIVERSITY OF IOWA · PI MURRAY, JEFFREY C · 2004 to 2013
$6.8M
PREDOCTORAL TRAINING PROGRAM IN GENETICST32GM008629 · NIGMS · UNIVERSITY OF IOWA · PI EBERL, DANIEL F · 1997 to 2021
$4.1M
CLONING AND CHARACTERIZATION OF THE VAN DER WOUDE GENER01DE013513 · NIDCR · UNIVERSITY OF IOWA · PI SCHUTTE, BRIAN C · 2000 to 2009
$2.6M
NIDCR NIH HHS R01 DE013513NIDCR NIH HHS R01-DE013513NIDCR NIH HHS R01 DE016148NIDCR NIH HHS R01-DE016148NIDCR NIH HHS R37 DE008559NIDCR NIH HHS R37-DE008559NIDCR NIH HHS U01 DE020057NIDCR NIH HHS U01-DE020057NIEHS NIH HHS P30 ES005605NIGMS NIH HHS T32 GM008629
6 · The paper itself

Abstract

Van der Woude syndrome is the most common form of syndromic orofacial clefting, accounting for 1-2% of all patients with cleft lip and/or cleft palate. Van der Woude and popliteal pterygium syndromes are caused by mutations in IRF6, but phenotypic variability within and among families with either syndrome suggests that other genetic factors contribute to the phenotypes. The aim of this study was to identify common variants acting as genetic modifiers of IRF6 as well as genotype-phenotype correlations based on mutation type and location. We identified an association between mutations in the DNA-binding domain of IRF6 and limb defects (including pterygia). Although we did not detect formally significant associations with the genes tested, borderline associations suggest several genes that could modify the VWS phenotype, including FOXE1, TGFB3, and TFAP2A. Some of these genes are hypothesized to be part of the IRF6 gene regulatory network and may suggest additional genes for future study when larger sample sizes are also available. We also show that families with the Van de Woude phenotype but in whom no mutations have been identified have a lower frequency of cleft lip, suggesting there may be locus and/or mutation class differences in Van de Woude syndrome.

Indexed as

Genetic Association StudiesAbnormalities, MultipleAllelesCleft LipCleft PalateCystsEye AbnormalitiesFamilyFingersGene FrequencyGenotypeHaplotypesHumansInterferon Regulatory FactorsKnee JointLipInterferon Regulatory FactorsIRF6 protein, humancleftlip pitmodifier genepopliteal pterygiumVan der Woude

Identifiers

PMID23949966
PMCPMC3898350
OpenAlexW1968467468

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.