Evidence map›Paper›PMID 23949662›Full record

ArticleThe ISME journal2014

Taxonomically and functionally diverse microbial communities in deep crystalline rocks of the Fennoscandian shield.

Mari Nyyssönen, Jenni Hultman, Lasse Ahonen, Ilmo Kukkonen, Lars Paulin, Pia Laine, Merja Itävaara, Petri Auvinen

Abstract read
In one paragraph

Article in The ISME journal, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 61 papers.

0numbers the graph read from it
0cells of the map it votes in
61citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

61 citing papers in PubMed.

  1. Article
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  3. Article
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  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Deep terrestrial indigenous microbial community dominated byCommunications earth & environment · 2024
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Geological activity shapes the microbiome in deep-subsurface aquifers by advection.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  17. Microbial diversity in extreme environments.Nature reviews. Microbiology · 2022
    Review
  18. Article
  19. Article
  20. Review

1 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Mari NyyssönenVTT Technical Research Centre of Finland, Espoo, Finland.
Jenni HultmanInstitute of Biotechnology, University of Helsinki, Helsinki, Finland.
Lasse AhonenGeological Survey of Finland, Espoo, Finland.
Ilmo KukkonenGeological Survey of Finland, Espoo, Finland.
Lars PaulinInstitute of Biotechnology, University of Helsinki, Helsinki, Finland.
Pia LaineInstitute of Biotechnology, University of Helsinki, Helsinki, Finland.
Merja ItävaaraVTT Technical Research Centre of Finland, Espoo, Finland.
Petri AuvinenInstitute of Biotechnology, University of Helsinki, Helsinki, Finland.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Microbial life in the nutrient-limited and low-permeability continental crystalline crust is abundant but remains relatively unexplored. Using high-throughput sequencing to assess the 16S rRNA gene diversity, we found diverse bacterial and archaeal communities along a 2516-m-deep drill hole in continental crystalline crust in Outokumpu, Finland. These communities varied at different sampling depths in response to prevailing lithology and hydrogeochemistry. Further analysis by shotgun metagenomic sequencing revealed variable carbon and nutrient utilization strategies as well as specific functional and physiological adaptations uniquely associated with specific environmental conditions. Altogether, our results show that predominant geological and hydrogeochemical conditions, including the existence and connectivity of fracture systems and the low amounts of available energy, have a key role in controlling microbial ecology and evolution in the nutrient and energy-poor deep crustal biosphere.

Indexed as

Bacterial Physiological PhenomenaBiodiversitySoil MicrobiologyAdaptation, PhysiologicalArchaeaBacteriaBacteriophagesCarbon CycleFinlandGeologyMetagenomicsRNA, Ribosomal, 16SSoilWaterRNA, Ribosomal, 16SSoilWater

Identifiers

PMID23949662
PMCPMC3869007

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.