Evidence map›Paper›PMID 23948103›Full record

ArticleBrain research2013

Quantitative studies of caspase-3 catalyzed αII-spectrin breakdown.

Marta A Witek, L W-M Fung

Open access · greenAbstract read
In one paragraph

Article in Brain research, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.5field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 10 citations in OpenAlex.

  1. Observational
  2. Article
  3. Article
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Marta A WitekDepartment of Chemistry, University of Illinois at Chicago, 845 W. Taylor Street, MC 111, Chicago, IL 60607, USA.
L W-M Fung
University of Illinois Chicago · US

Funding

Multidisciplinary Oral Science TrainingT32DE018381 · NIDCR · UNIVERSITY OF ILLINOIS AT CHICAGO · PI COOPER, LYNDON F · 2008 to 2019
$3.6M
Assembly of Spectrin IsoformsR01GM068621 · NIGMS · UNIVERSITY OF ILLINOIS AT CHICAGO · PI FUNG, LESLIE W. · 2003 to 2009
$1.5M
NIDCR NIH HHS T32 DE018381NIDCR NIH HHS T32DE018381NIGMS NIH HHS GM68621NIGMS NIH HHS R01 GM068621
6 · The paper itself

Abstract

Under various physiological and patho-physiological conditions, spectrin breakdown reactions generate several spectrin breakdown products (SBDPs)-in particular SBDPs of 150 kDa (SBDP150) and 120 kDa (SBDP120). Recently, numerous studies have shown that reactions leading to SBDPs are physiologically relevant, well regulated, and complex. Yet molecular studies on the mechanism of the SBDP formation are comparatively scarce. We have designed basic systems to allow us to follow the breakdown of αII-spectrin model proteins by caspase-3 in detail with gel electrophoresis, fluorescence and mass spectrometry methods. Amongst the predicted and reported sites, our results show that caspase-3 cleaves after residues D1185 and D1478, but not after residues D888, D1340 and D1475. We also found that the cleavage at these two sites is independent of each other. It may be possible to inhibit one site without affecting the other site. Cleavage after residue D1185 in intact αII-spectrin leads to SBDP150, and cleavage after D1478 site leads to SBDP120. Our results also show that the cleavage after the D1185 residue is unusually efficient, with a kcat/KM value of 40,000 M(-1) s(-1), and the cleavage after the D1478 site is more similar to most of the other reported caspase-3 substrates, with a kcat/KM value of 3000 M(-1) s(-1). We believe that this study lays out a methodology and foundation to study caspase-3 catalyzed spectrin breakdown to provide quantitative information. Molecular understanding may lead to better understanding of brain injuries and more precise and specific biomarker development.

Indexed as

Amino Acid SequenceBiocatalysisCaspase 3HumansMolecular Sequence DataProtein Structure, TertiaryProteolysisSpectrinCaspase 3Spectrin20mM piperazine-N,N′-bis-(2-ethanesulfonic acid) with 100mM NaCl, 10mM DTT, 1mM EDTA, 0.1% CHAPS, and 10% sucrose at pH 7.2a recombinant protein consisting of residues 1087–1344 of αII-spectrin plus GS as the first two residuesa recombinant protein consisting of residues 1087–1556 of αII-spectrin plus GS as the first two residuesa recombinant protein consisting of residues 1335–1556 of αII-spectrin plus GS as the first two residuesa recombinant protein consisting of residues 1441–1556 of αII-spectrin plus GS as the first two residuesa recombinant protein consisting of residues 780–1344 of αII-spectrin plus GS as the first two residuesBrain injury biomarker[casp-3]Caspase-3caspase activity bufferD10–D11D10-D11(w)(′)D10-D11(w-1)(')D10-D11(w-1)(′)D10-D11(w-2)(')D10–D11 with all its tryptophan residues except W1106 and W1192 replaced with phenylalanine residuesD10–D11 with all its tryptophan residues except W1192 and W1215 replaced with phenylalanine residuesD10–D11 with all its tryptophan residues except W1192 replaced with phenylalanine residuesD10–D13D12–D13D13D13(w)(′)D13 with W1533F mutationNonerythroid (brain) spectrinSBDPSBDP120SBDP150SBDP37spectrin breakdown productSpectrin breakdown productthe concentration of recombinant caspase-3the SBDP with an electrophoretic mass of 120kDathe SBDP with an electrophoretic mass of 150kDathe SBDP with an electrophoretic mass of 37kDa

Identifiers

PMID23948103
PMCPMC3786445
OpenAlexW2110409551

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.