Evidence map›Paper›PMID 23945374›Full record

ArticleThe Journal of infectious diseases2014

Associations between human leukocyte antigen class I variants and the Mycobacterium tuberculosis subtypes causing disease.

Muneeb Salie, Lize van der Merwe, Marlo Möller, Michelle Daya, Gian D van der Spuy, Paul D van Helden, Maureen P Martin, Xiao-Jiang Gao, Robin M Warren, Mary Carrington and 1 more

Abstract read
In one paragraph

Article in The Journal of infectious diseases, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 2 syntheses or guidelines pooled it.

  1. Pooled it
  2. Pooled it
  3. Trial
  4. Article
  5. Review
  6. Review
  7. Observational
  8. Article
  9. Article
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  11. Review
  12. Article
  13. Pharmacogenomics and personalized medicine · 2023
    Article
  14. Interaction betweenPathogens (Basel, Switzerland) · 2021
    Article
  15. Article
  16. Article
  17. Article
  18. Genetics and evolution of tuberculosis pathogenesis: New perspectives and approaches.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2020
    Review
  19. Article
  20. The Interplay of Human andFrontiers in genetics · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Muneeb SalieMRC Centre for Molecular and Cellular Biology and the DST/NRF Centre of Excellence for Biomedical TB Research, Division of Molecular Biology and Human Genetics, Stellenbosch University, Tygerberg.
Lize van der Merwe
Marlo Möller
Michelle Daya
Gian D van der Spuy
Paul D van Helden
Maureen P Martin
Xiao-Jiang Gao
Robin M Warren
Mary Carrington
Eileen G Hoal

Funding

Effects of genetic polymorphism in MHC, KIR, and related loci on human diseaseZIABC010791 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI CARRINGTON, MARY N. · 2009 to 2025
$18.2M
TUBERCULOSIS SUPPLEMENTD43TW000231 · FIC · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI ABDOOL KARIM, QUARRAISHA · 1993 to 2014
$13.1M
CCR NIH HHS HHSN261200800001CFIC NIH HHS 2 D43 TW000231 16FIC NIH HHS D43 TW000231NCI NIH HHS HHSN261200800001EWellcome Trust 053844/Z/98/Z
6 · The paper itself

Abstract

backgroundThe development of active tuberculosis disease has been shown to be multifactorial. Interactions between host and bacterial genotype may influence disease outcome, with some studies indicating the adaptation of M. tuberculosis strains to specific human populations. Here we investigate the role of the human leukocyte antigen (HLA) class I genes in this biological process.

methodsThree hundred patients with tuberculosis from South Africa were typed for their HLA class I alleles by direct sequencing. Mycobacterium tuberculosis genotype classification was done by IS6110 restriction fragment length polymorphism genotyping and spoligotyping.

resultsWe showed that Beijing strain occurred more frequently in individuals with multiple disease episodes (P < .001) with the HLA-B27 allele lowering the odds of having an additional episode (odds ratio, 0.21; P = .006). Associations were also identified for specific HLA types and disease caused by the Beijing, LAM, LCC, and Quebec strains. HLA types were also associated with disease caused by strains from the Euro-American or East Asian lineages, and the frequencies of these alleles in their sympatric human populations identified potential coevolutionary events between host and pathogen.

conclusionsThis is the first report of the association of human HLA types and M. tuberculosis strain genotype, highlighting that both host and pathogen genetics need to be taken into consideration when studying tuberculosis disease development.

Indexed as

Host-Pathogen InteractionsAdultAllelesDNA Transposable ElementsFemaleGenotypeHistocompatibility Antigens Class IHumansMaleMiddle AgedMolecular TypingMycobacterium tuberculosisPolymorphism, Restriction Fragment LengthSequence Analysis, DNASouth AfricaTuberculosisDNA Transposable ElementsHistocompatibility Antigens Class Icoadaptationhost–pathogenhuman leukocyte antigensMycobacterium tuberculosissusceptibilitytuberculosis

Identifiers

PMID23945374
PMCPMC3873786

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.