Evidence map›Paper›PMID 23941274›Full record

ArticleAnalytical chemistry2013

VirD: a virion display array for profiling functional membrane proteins.

Shaohui Hu, Yingzhu Feng, Brandon Henson, Bochu Wang, Xiaofang Huang, Min Li, Prashant Desai, Heng Zhu

Abstract read
In one paragraph

Article in Analytical chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. A membrane protein display platform for receptor interactome discovery.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  3. Article
  4. Article
  5. Developments and Applications of Functional Protein Microarrays.Molecular & cellular proteomics : MCP · 2020
    Review
  6. Article
  7. Article
  8. Review
  9. A Human Lectin Microarray for Sperm Surface Glycosylation Analysis.Molecular & cellular proteomics : MCP · 2016
    Article
  10. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Shaohui HuDepartment of Pharmacology and Molecular Sciences, Johns Hopkins School of Medicine, Baltimore, Maryland 21205, USA.
Yingzhu Feng
Brandon Henson
Bochu Wang
Xiaofang Huang
Min Li
Prashant Desai
Heng Zhu

Funding

TCP5: ACTIVE SITE LABELING REAGENT FOR ACETYLTRANSFERASESU54RR020839 · NCRR · JOHNS HOPKINS UNIVERSITY · PI BOEKE, JEF D · 2004 to 2011
$27.4M
Johns Hopkins Ion Channel CenterU54MH084691 · NIMH · JOHNS HOPKINS UNIVERSITY · PI LI, MIN · 2008 to 2012
$13.9M
Monospecific monoclonal antibodies against human transcription factorsU54HG006434 · NHGRI · JOHNS HOPKINS UNIVERSITY · PI BLACKSHAW, SETH, ZHU, HENG · 2011 to 2015
$13.8M
Proteome Characterization Center: A Genoproteomics Pipeline for Cance ResearchU24CA160036 · NCI · JOHNS HOPKINS UNIVERSITY · PI CHAN, DANIEL WANYUI, ZHANG, HUI · 2011 to 2016
$10.7M
DNA-Binding Activity of Human Transcription FactorsR01GM076102 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI ZHU, HENG · 2006 to 2014
$2.6M
Maturation functions of the HSV-1 tegumentR01AI061382 · NIAID · JOHNS HOPKINS UNIVERSITY · PI DESAI, PRASHANT J · 2006 to 2010
$1.8M
Generation and Evaluation of KSHV VLPs as VaccinesRC2CA148402 · NCI · JOHNS HOPKINS UNIVERSITY · PI DESAI, PRASHANT J, HAYWARD, GARY S · 2009 to 2010
$994k
Rapid Trichomonas tests: a teen STI prevention strategyK23AI063182 · NIAID · CINCINNATI CHILDRENS HOSP MED CTR · PI HUPPERT, JILL S · 2005 to 2009
$629k
Structural Protein Networks ("Interactome") in HerpesvirusesR21AI070740 · NIAID · JOHNS HOPKINS UNIVERSITY · PI ZHU, HENG · 2006 to 2007
$443k
How does the KSHV small capsid protein function to promote self-assembly?R21AI107530 · NIAID · JOHNS HOPKINS UNIVERSITY · PI DESAI, PRASHANT J · 2013 to 2014
$431k
NCI NIH HHS RC2 CA148402NCI NIH HHS U24 CA160036NCI NIH HHS U24CA160036NCRR NIH HHS RR020839NCRR NIH HHS U54 RR020839NHGRI NIH HHS U54 HG006434NHGRI NIH HHS U54HG006434NIAID NIH HHS AI063182NIAID NIH HHS K23 AI063182NIAID NIH HHS R01 AI061382NIAID NIH HHS R21 AI070740NIAID NIH HHS R21 AI107530NIGMS NIH HHS GM076102NIGMS NIH HHS R01 GM076102NIMH NIH HHS U54 MH084691NIMH NIH HHS U54MH084691
6 · The paper itself

Abstract

To facilitate high-throughput biochemical analyses of membrane proteins, we have developed a novel display technology in a microarray format. Both single-pass (cluster of differentiation 4, CD4) and multiple-pass (G protein-coupled receptor 77, GPR77) human transmembrane proteins were engineered to be displayed in the membrane envelop of herpes simplex virions. These viruses produce large spherical virions displaying multiple copies of envelop proteins. Our aim was to engineer this virus to express these human proteins during the virus productive cycle and incorporate the human proteins into the virion during the assembly process. Another strategy presented includes engineering a fusion of glycoprotein C (gC), a major constituent of herpes simplex virus type 1 (HSV-1) virions, by hijacking the cis-acting signals to direct incorporation of the chimeric protein into the virion. The expression of the human proteins in infected cells, at the cell surface and in purified virions, is in the correct transmembrane orientation, and the proteins are biochemically functional. Purified virions printed on glass slides form a high-density Virion Display (VirD) Array, and the displayed proteins were demonstrated to retain their native conformations and interactions on the VirD Array judging by similar assays, such as antibody staining, as well as lectin and ligand binding. This method can be readily scaled or tailored for different modalities including a high-content, high-throughput platform for screening ligands and drugs of human membrane proteins.

Indexed as

AnimalsCell MembraneChlorocebus aethiopsHumansMaleMembrane ProteinsProtein Array AnalysisVero CellsVirionMembrane Proteins

Identifiers

PMID23941274
PMCPMC3791513

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.