Evidence map›Paper›PMID 23940707›Full record

ArticlePloS one2013

Ancient dispersal of the human fungal pathogen Cryptococcus gattii from the Amazon rainforest.

Ferry Hagen, Paulo C Ceresini, Itzhack Polacheck, Hansong Ma, Filip van Nieuwerburgh, Toni Gabaldón, Sarah Kagan, E Rhiannon Pursall, Hans L Hoogveld, Leo J J van Iersel and 14 more

Abstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 75 papers.

0numbers the graph read from it
0cells of the map it votes in
75citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

75 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Antifungal Resistance in Cryptococcal Infections.Pathogens (Basel, Switzerland) · 2024
    Review
  7. Article
  8. Article
  9. Gene, virulence and related regulatory mechanisms inActa biochimica et biophysica Sinica · 2022
    Review
  10. Article
  11. Central Nervous System Cryptococcosis due toCurrent tropical medicine reports · 2022
    Review
  12. Article
  13. Review
  14. Article
  15. Article
  16. Cryptococcus neoformans: Sex, morphogenesis, and virulence.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2021
    Review
  17. Article
  18. Review
  19. A novelEmerging microbes & infections · 2020
    Article
  20. Article

15 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors.

Ferry HagenDepartment of Yeast and Basidiomycete Research, CBS-KNAW Fungal Biodiversity Centre, Utrecht, The Netherlands.
Paulo C Ceresini
Itzhack Polacheck
Hansong Ma
Filip van Nieuwerburgh
Toni Gabaldón
Sarah Kagan
E Rhiannon Pursall
Hans L Hoogveld
Leo J J van Iersel
Gunnar W Klau
Steven M Kelk
Leen Stougie
Karen H Bartlett
Kerstin Voelz
Leszek P Pryszcz
Elizabeth Castañeda
Marcia Lazera
Wieland Meyer
Dieter Deforce
Jacques F Meis
Robin C May
Corné H W Klaassen
Teun Boekhout

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Over the past two decades, several fungal outbreaks have occurred, including the high-profile 'Vancouver Island' and 'Pacific Northwest' outbreaks, caused by Cryptococcus gattii, which has affected hundreds of otherwise healthy humans and animals. Over the same time period, C. gattii was the cause of several additional case clusters at localities outside of the tropical and subtropical climate zones where the species normally occurs. In every case, the causative agent belongs to a previously rare genotype of C. gattii called AFLP6/VGII, but the origin of the outbreak clades remains enigmatic. Here we used phylogenetic and recombination analyses, based on AFLP and multiple MLST datasets, and coalescence gene genealogy to demonstrate that these outbreaks have arisen from a highly-recombining C. gattii population in the native rainforest of Northern Brazil. Thus the modern virulent C. gattii AFLP6/VGII outbreak lineages derived from mating events in South America and then dispersed to temperate regions where they cause serious infections in humans and animals.

Indexed as

AnimalsBrazilBritish ColumbiaCells, CulturedCryptococcosisCryptococcus gattiiDisease OutbreaksGenes, FungalHumansLikelihood FunctionsMacrophagesMiceMice, Inbred BALB CMolecular Sequence DataMultilocus Sequence TypingMycological Typing Techniques

Identifiers

PMID23940707
PMCPMC3737135

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.