ArticleProceedings of the National Academy of Sciences of the United States of America2013
Dissecting yield-associated loci in super hybrid rice by resequencing recombinant inbred lines and improving parental genome sequences.
Article in Proceedings of the National Academy of Sciences of the United States of America, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 79 papers.
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79 citing papers in PubMed.
- Integrating transcriptomics and proteomics to analyze new regulatory genes related to rice grain development.Food chemistry. Molecular sciences · 2025Article
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- Identification ofMolecular breeding : new strategies in plant improvement · 2024Article
- Skim resequencing finely maps the downy mildew resistance lociHorticulture research · 2023Article
- Genomic decoding of breeding history to guide breeding-by-design in rice.National science review · 2023Article
- The Pyramiding of Elite Allelic Genes Related to Grain Number Increases Grain Number per Panicle Using the Recombinant Lines Derived fromInternational journal of molecular sciences · 2023Article
- Chromosome-level genome assembly of bunching onion illuminates genome evolution and flavor formation in Allium crops.Nature communications · 2022Article
- Profile of Dr. Qian Qian.Science China. Life sciences · 2022Article
- GGDB: A Grameneae genome alignment database of homologous genes hierarchically related to evolutionary events.Plant physiology · 2022Article
- Gene fusion as an important mechanism to generate new genes in the genus Oryza.Genome biology · 2022Article
- High-density genetic mapping identified QTLs for anaerobic germination tolerance in rice.Frontiers in plant science · 2022Article
- Mapping and selection of downy mildew resistance in spinach cv. whale by low coverage whole genome sequencing.Frontiers in plant science · 2022Article
- The SEEDLING BIOMASS 1 allele from indica rice enhances yield performance under low-nitrogen environments.Plant biotechnology journal · 2021Article
- A consensus and saturated genetic map provides insight into genome anchoring, synteny of Solanaceae and leaf- and fruit-related QTLs in wolfberry (Lycium Linn.).BMC plant biology · 2021Article
- Linkage analysis, GWAS, transcriptome analysis to identify candidate genes for rice seedlings in response to high temperature stress.BMC plant biology · 2021Article
- A quantitative genomics map of rice provides genetic insights and guides breeding.Nature genetics · 2021Article
- Toward Integrated Multi-Omics Intervention: Rice Trait Improvement and Stress Management.Frontiers in plant science · 2021Review
- Heterosis-associated genes confer high yield in super hybrid rice.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020Article
- Genomic diversity generated by a transposable element burst in a rice recombinant inbred population.Proceedings of the National Academy of Sciences of the United States of America · 2020Article
19 more citing papers are in PubMed but not listed here.
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36 authors.
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Abstract
The growing world population and shrinkage of arable land demand yield improvement of rice, one of the most important staple crops. To elucidate the genetic basis of yield and uncover its associated loci in rice, we resequenced the core recombinant inbred lines of Liang-You-Pei-Jiu, the widely cultivated super hybrid rice, and constructed a high-resolution linkage map. We detected 43 yield-associated quantitative trait loci, of which 20 are unique. Based on the high-density physical map, the genome sequences of paternal variety 93-11 and maternal cultivar PA64s of Liang-You-Pei-Jiu were significantly improved. The large recombinant inbred line population combined with plentiful high-quality single nucleotide polymorphisms and insertions/deletions between parental genomes allowed us to fine-map two quantitative trait loci, qSN8 and qSPB1, and to identify days to heading8 and lax panicle1 as candidate genes, respectively. The quantitative trait locus qSN8 was further confirmed to be days to heading8 by a complementation test. Our study provided an ideal platform for molecular breeding by targeting and dissecting yield-associated loci in rice.
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