Evidence map›Paper›PMID 23940257›Full record

ArticleThe Journal of experimental medicine2013

Coreceptor affinity for MHC defines peptide specificity requirements for TCR interaction with coagonist peptide-MHC.

John A H Hoerter, Joanna Brzostek, Maxim N Artyomov, Steven M Abel, Javier Casas, Vasily Rybakin, Jeanette Ampudia, Carina Lotz, Janet M Connolly, Arup K Chakraborty and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of experimental medicine, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Dual Role of CD4 in Peripheral T Lymphocytes.Frontiers in immunology · 2019
    Review
  14. Article
  15. Article
  16. Article
  17. Engineering CAR-T cells: Design concepts.Trends in immunology · 2015
    Review
  18. Article
  19. Modeling the T cell immune response: a fascinating challenge.Journal of pharmacokinetics and pharmacodynamics · 2014
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 6 institutions in 2 countries.

John A H HoerterDepartment of Immunology and Microbial Science, The Scripps Research Institute, La Jolla, CA 92037, USA.
Joanna Brzostek
Maxim N Artyomov
Steven M Abel
Javier Casas
Vasily Rybakin
Jeanette Ampudia
Carina Lotz
Janet M Connolly
Arup K Chakraborty
Keith G Gould
Nicholas R J Gascoigne
Scripps Research Institute · USBroad Institute · USDivision of Chemistry · USImperial College London · GBRagon Institute of MGH, MIT and Harvard · USWashington University in St. Louis · US

Funding

PATHOGENESIS AND IMMUNOLOGY OF DISEASET32AI007244 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI NEMAZEE, DAVID · 1985 to 2022
$8.8M
Intermolecular Interactions in the Immunological SynapseR01GM065230 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI SAUER, KARSTEN · 2002 to 2014
$4.6M
SCT PROBES FOR PATHOGEN IMMUNITYR01AI055849 · NIAID · WASHINGTON UNIVERSITY · PI GILLANDERS, WILLIAM E. · 2004 to 2014
$3.3M
CD8 T Cell Recognition of MHC Class IR01AI027568 · NIAID · WASHINGTON UNIVERSITY · PI CONNOLLY, JANET M · 1989 to 2010
$3.3M
SCT PROBES FOR VIRAL IMMUNITYR56AI055849 · NIAID · WASHINGTON UNIVERSITY · PI HANSEN, TED HOWARD · 2009 to 2009
$380k
Medical Research Council G0400091NIAID NIH HHS AI027568NIAID NIH HHS AI055849NIAID NIH HHS R01 AI027568NIAID NIH HHS R01 AI055849NIAID NIH HHS R56 AI055849NIAID NIH HHS T32 AI007244NIGMS NIH HHS R01 GM065230
6 · The paper itself

Abstract

Recent work has demonstrated that nonstimulatory endogenous peptides can enhance T cell recognition of antigen, but MHCI- and MHCII-restricted systems have generated very different results. MHCII-restricted TCRs need to interact with the nonstimulatory peptide-MHC (pMHC), showing peptide specificity for activation enhancers or coagonists. In contrast, the MHCI-restricted cells studied to date show no such peptide specificity for coagonists, suggesting that CD8 binding to noncognate MHCI is more important. Here we show how this dichotomy can be resolved by varying CD8 and TCR binding to agonist and coagonists coupled with computer simulations, and we identify two distinct mechanisms by which CD8 influences the peptide specificity of coagonism. Mechanism 1 identifies the requirement of CD8 binding to noncognate ligand and suggests a direct relationship between the magnitude of coagonism and CD8 affinity for coagonist pMHCI. Mechanism 2 describes how the affinity of CD8 for agonist pMHCI changes the requirement for specific coagonist peptides. MHCs that bind CD8 strongly were tolerant of all or most peptides as coagonists, but weaker CD8-binding MHCs required stronger TCR binding to coagonist, limiting the potential coagonist peptides. These findings in MHCI systems also explain peptide-specific coagonism in MHCII-restricted cells, as CD4-MHCII interaction is generally weaker than CD8-MHCI.

Indexed as

Amino Acid SequenceAnimalsCD8-Positive T-LymphocytesCHO CellsComputer SimulationCricetinaeCricetulusEpitopesHistocompatibility Antigens Class IHistocompatibility Antigens Class IIHumansKineticsLymphocyte ActivationMiceModels, MolecularMolecular Sequence DataEpitopesHistocompatibility Antigens Class IHistocompatibility Antigens Class IIOvalbuminPeptidesReceptors, Antigen, T-Cell

Identifiers

PMID23940257
PMCPMC3754861
OpenAlexW2144599081

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.