Evidence map›Paper›PMID 23940048›Full record

ArticleThe Journal of biological chemistry2013

Semaphorin 3A binds to the perineuronal nets via chondroitin sulfate type E motifs in rodent brains.

Gunnar Dick, Chin Lik Tan, Joao Nuno Alves, Erich M E Ehlert, Gregory M Miller, Linda C Hsieh-Wilson, Kazuyuki Sugahara, Arie Oosterhof, Toin H van Kuppevelt, Joost Verhaagen and 2 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 87 papers.

0numbers the graph read from it
0cells of the map it votes in
87citing papers in PubMed
5.1field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

87 citing papers in PubMed, 147 citations in OpenAlex.

  1. Article
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  4. Review
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  7. Critical Periods and Beyond: Dynamic Functions of Perineuronal Nets in Cognition, Development, and Disease.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2025
    Review
  8. Review
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  10. Review
  11. Article
  12. Review
  13. Review
  14. Article
  15. Perineuronal Nets on CA2 Pyramidal Cells and Parvalbumin-Expressing Cells Differentially Regulate Hippocampal-Dependent Memory.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2025
    Article
  16. Article
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  18. Review
  19. Molecular mechanisms of proteoglycan-mediated semaphorin signaling in axon guidance.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  20. Article

27 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 8 institutions in 5 countries.

Gunnar DickJohn van Geest Centre for Brain Repair, University of Cambridge, Cambridge CB2 0PY, United Kingdom; Department of Biosciences, Faculty of Mathematics and Natural Sciences, University of Oslo, 0316 Oslo, Norway.
Chin Lik TanJohn van Geest Centre for Brain Repair, University of Cambridge, Cambridge CB2 0PY, United Kingdom.
Joao Nuno AlvesJohn van Geest Centre for Brain Repair, University of Cambridge, Cambridge CB2 0PY, United Kingdom.
Erich M E EhlertNetherlands Institute for Neuroscience, Institute of the Royal Netherlands Academy of Arts and Sciences, 1105 BA Amsterdam, The Netherlands.
Gregory M MillerCalifornia Institute of Technology and Howard Hughes Medical Institute, Division of Chemistry and Chemical Engineering, Pasadena, California 91125.
Linda C Hsieh-WilsonCalifornia Institute of Technology and Howard Hughes Medical Institute, Division of Chemistry and Chemical Engineering, Pasadena, California 91125.
Kazuyuki SugaharaLaboratory of Proteoglycan Signaling and Therapeutics, Graduate School of Life Science, Faculty of Advanced Life Science, Hokkaido University, 001-0021 Sapporo, Japan.
Arie OosterhofDepartment of Biochemistry, Nijmegen Centre for Molecular Life Sciences, Radboud University Nijmegen Medical Centre, P. O. Box 9101, 6500 HB Nijmegen, The Netherlands.
Toin H van KuppeveltDepartment of Biochemistry, Nijmegen Centre for Molecular Life Sciences, Radboud University Nijmegen Medical Centre, P. O. Box 9101, 6500 HB Nijmegen, The Netherlands.
Joost VerhaagenNetherlands Institute for Neuroscience, Institute of the Royal Netherlands Academy of Arts and Sciences, 1105 BA Amsterdam, The Netherlands; Centre for Neurogenomics and Cognitive Research, Vrije Universiteit Amsterdam, 1081HV Amsterdam, The Netherlands.
James W FawcettJohn van Geest Centre for Brain Repair, University of Cambridge, Cambridge CB2 0PY, United Kingdom.
Jessica C F KwokJohn van Geest Centre for Brain Repair, University of Cambridge, Cambridge CB2 0PY, United Kingdom. Electronic address: jcfk2@cam.ac.uk.
University of Cambridge · GBRadboud University Nijmegen · NLCalifornia Institute of Technology · USHokkaido University · JPHoward Hughes Medical Institute · USRoyal Netherlands Academy of Arts and Sciences · NLUniversity of Oslo · NOVrije Universiteit Amsterdam · NL

Funding

A chemical approach to elucidating the structure-function relationships of chondronitin sulfate glycosaminoglycansR01GM093627 · NIGMS · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI HSIEH-WILSON, LINDA C · 2010 to 2018
$3.6M
NIGMS NIH HHS R01 GM093627
6 · The paper itself

Abstract

Chondroitin sulfate (CS) and the CS-rich extracellular matrix structures called perineuronal nets (PNNs) restrict plasticity and regeneration in the CNS. Plasticity is enhanced by chondroitinase ABC treatment that removes CS from its core protein in the chondroitin sulfate proteoglycans or by preventing the formation of PNNs, suggesting that chondroitin sulfate proteoglycans in the PNNs control plasticity. Recently, we have shown that semaphorin3A (Sema3A), a repulsive axon guidance molecule, localizes to the PNNs and is removed by chondroitinase ABC treatment (Vo, T., Carulli, D., Ehlert, E. M., Kwok, J. C., Dick, G., Mecollari, V., Moloney, E. B., Neufeld, G., de Winter, F., Fawcett, J. W., and Verhaagen, J. (2013) Mol. Cell. Neurosci. 56C, 186-200). Sema3A is therefore a candidate for a PNN effector in controlling plasticity. Here, we characterize the interaction of Sema3A with CS of the PNNs. Recombinant Sema3A interacts with CS type E (CS-E), and this interaction is involved in the binding of Sema3A to rat brain-derived PNN glycosaminoglycans, as demonstrated by the use of CS-E blocking antibody GD3G7. In addition, we investigate the release of endogenous Sema3A from rat brain by biochemical and enzymatic extractions. Our results confirm the interaction of Sema3A with CS-E containing glycosaminoglycans in the dense extracellular matrix of rat brain. We also demonstrate that the combination of Sema3A and PNN GAGs is a potent inhibitor of axon growth, and this inhibition is reduced by the CS-E blocking antibody. In conclusion, Sema3A binding to CS-E in the PNNs may be a mechanism whereby PNNs restrict growth and plasticity and may represent a possible point of intervention to facilitate neuronal plasticity.

Indexed as

Amino Acid MotifsAnimalsAxonsBrainBrain ChemistryChondroitin SulfatesExtracellular MatrixHEK293 CellsHumansMiceNerve Tissue ProteinsNeuronal PlasticityProtein BindingRatsSemaphorin-3AChondroitin SulfatesNerve Tissue ProteinsSema3a protein, ratSemaphorin-3AChondroitin SulfateGlycosaminoglycanNeuronal PlasticityPerineuronal netsProteoglycanRegenerationSemaphorinSemaphorin3A

Identifiers

PMID23940048
PMCPMC3779733
OpenAlexW2000453869

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.