Evidence map›Paper›PMID 23940047›Full record

ArticleThe Journal of biological chemistry2013

Nicotinamide adenine dinucleotide-induced multimerization of the co-repressor CtBP1 relies on a switching tryptophan.

Dana L Madison, Jacqueline A Wirz, Don Siess, James R Lundblad

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
0.4field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 83 citations in OpenAlex.

  1. Article
  2. Obesity Disrupts CtBP2-Mediated Maintenance of Transcriptional Equilibrium in Hypothalamic Feeding Circuitry.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2026
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  17. Chemical Proteomics Approach for Profiling the NAD Interactome.Journal of the American Chemical Society · 2021
    Article
  18. Tête-à-tête with CtBP dimers.Structure (London, England : 1993) · 2021
    Article
  19. Cryo-EM structure of CtBP2 confirms tetrameric architecture.Structure (London, England : 1993) · 2021
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Dana L MadisonFrom the Division of Endocrinology and.
Jacqueline A Wirz
Don Siess
James R Lundblad
Oregon Health & Science University · US

Funding

Oregon Clinical and Translational Research InstituteUL1TR000128 · NCATS · OREGON HEALTH & SCIENCE UNIVERSITY · PI ELLISON, DAVID H · 2012 to 2015
$28.7M
Transcriptional Coregulatory Factors in Gene ExpressionR01DK060133 · NIDDK · OREGON HEALTH AND SCIENCE UNIVERSITY · PI LUNDBLAD, JAMES R · 2002 to 2005
$925k
Transcriptional Repression by CtBP at the p21 PromoterK08CA109158 · NCI · OREGON HEALTH & SCIENCE UNIVERSITY · PI MADISON, DANA L · 2005 to 2009
$688k
NCATS NIH HHS UL1 TR000128NCI NIH HHS K08 CA109158NCI NIH HHS K08CA109158NIDDK NIH HHS R01 DK060133NIDDK NIH HHS R01DK060133
6 · The paper itself

Abstract

The transcriptional co-repressor C-terminal binding protein (CtBP) interacts with a number of repressor proteins and chromatin modifying enzymes. How the biochemical properties including binding of dinucleotide, oligomerization, and dehydrogenase domains of CtBP1 direct the assembly of a functional co-repressor to influence gene expression is not well understood. In the current study we demonstrate that CtBP1 assembles into a tetramer in a NAD(H)-dependent manner, proceeding through a dimeric intermediate. We find that NAD-dependent oligomerization correlates with NAD(+) binding affinity and that the carboxyl terminus is required for assembly of a dimer of dimers. Mutant CtBP1 proteins that abrogate dinucleotide-binding retain wild type affinity for the PXDLS motif, but do not self-associate either in vitro or in vivo. CtBP1 proteins with mutations in the dehydrogenase domain still retain the ability to self-associate and bind target proteins. Both co-immunoprecipitation and mammalian two-hybrid experiments demonstrate that CtBP1 self-association occurs within the nucleus, and depends on dinucleotide binding. Repression of transcription does not depend on dinucleotide binding or an intact dehydrogenase domain, but rather depends on the amino-terminal domain that recruits PXDLS containing targets. We show that tryptophan 318 (Trp(318)) is a critical residue for tetramer assembly and likely functions as a switch for effective dimerization following NAD(+) binding. These results suggest that dinucleotide binding permits CtBP1 to form an intranuclear homodimer through a Trp(318) switch, creating a nucleation site for multimerization through the C-terminal domain for tetramerization to form an effective repression complex.

Indexed as

Alcohol OxidoreductasesAmino Acid MotifsBinding SitesCell Line, TumorChromatography, GelCross-Linking ReagentsDNA-Binding ProteinsFluorescence Resonance Energy TransferGene Expression Regulation, NeoplasticHumansMutagenesisNADNucleotidesProtein BindingProtein MultimerizationProtein Structure, TertiaryAlcohol OxidoreductasesCross-Linking ReagentsC-terminal binding proteinDNA-Binding ProteinsNADNucleotidesTryptophanCorepressor TranscriptionC-terminal-binding ProteinDehydrogenaseNADProtein-Protein InteractionsTranscription

Identifiers

PMID23940047
PMCPMC3784699
OpenAlexW2127294067

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.