Evidence map›Paper›PMID 23940032›Full record

ArticleThe Journal of biological chemistry2013

A constitutively activating mutation alters the dynamics and energetics of a key conformational change in a ligand-free G protein-coupled receptor.

Hisao Tsukamoto, David L Farrens

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 43 citations in OpenAlex.

  1. Article
  2. Article
  3. A rapid, tag-free way to purify functional GPCRs.The Journal of biological chemistry · 2024
    Article
  4. Article
  5. Review
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Computational Approaches to Prioritize Cancer Driver Missense Mutations.International journal of molecular sciences · 2018
    Review
  14. Structural properties determining low KThe Journal of biological chemistry · 2018
    Article
  15. Article
  16. Review
  17. Decay of an active GPCR: Conformational dynamics govern agonist rebinding and persistence of an active, yet empty, receptor state.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  18. Article
  19. Article
  20. Structural dynamics and energetics underlying allosteric inactivation of the cannabinoid receptor CB1.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Hisao TsukamotoFrom the Department of Biochemistry and Molecular Biology, Oregon Health and Science University, Portland, Oregon 97239-3098.
David L Farrens
Oregon Health & Science University · US

Funding

Structural Dynamics of Retinal Binding and ReleaseR01EY015436 · NEI · OREGON HEALTH & SCIENCE UNIVERSITY · PI FARRENS, DAVID L · 2006 to 2014
$2.6M
NEI NIH HHS EY015436NEI NIH HHS R01 EY015436
6 · The paper itself

Abstract

G protein-coupled receptors (GPCRs) undergo dynamic transitions between active and inactive conformations. Usually, these conversions are triggered when the receptor detects an external signal, but some so-called constitutively activating mutations, or CAMs, induce a GPCR to bind and activate G proteins in the absence of external stimulation, in ways still not fully understood. Here, we investigated how a CAM alters the structure of a GPCR and the dynamics involved as the receptor transitions between different conformations. Our approach used site-directed fluorescence labeling (SDFL) spectroscopy to compare opsin, the ligand-free form of the GPCR rhodopsin, with opsin containing the CAM M257Y, focusing specifically on key movements that occur in the sixth transmembrane helix (TM6) during GPCR activation. The site-directed fluorescence labeling data indicate opsin is constrained to an inactive conformation both in detergent micelles and lipid membranes, but when it contains the M257Y CAM, opsin is more dynamic and can interact with a G protein mimetic. Further study of these receptors using tryptophan-induced quenching (TrIQ) methods indicates that in detergent, the CAM significantly increases the population of receptors in the active state, but not in lipids. Subsequent Arrhenius analysis of the TrIQ data suggests that, both in detergent and lipids, the CAM lowers the energy barrier for TM6 movement, a key transition required for conversion between the inactive and active conformations. Together, these data suggest that the lowered energy barrier is a primary effect of the CAM on the receptor dynamics and energetics.

Indexed as

MutationAnimalsCattleChlorocebus aethiopsCOS CellsCrystallography, X-RayDetergentsLigandsLipidsMicellesOpsinsProtein Structure, SecondaryReceptors, G-Protein-CoupledRhodopsinSpectrometry, FluorescenceTryptophanDetergentsLigandsLipidsMicellesOpsinsReceptors, G-Protein-CoupledRhodopsinTryptophanConformational TransitionsEnergy LandscapesFluorescenceG Protein-coupled Receptors (GPCR)Protein DynamicsProtein EnergeticsReceptor Structure-FunctionRhodopsinSite-directed Fluorescence Labeling (SDFL)Tryptophan-induced Quenching (TrIQ)

Identifiers

PMID23940032
PMCPMC3784730
OpenAlexW2018973560

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.