Evidence map›Paper›PMID 23939042›Full record

ArticleAutophagy2013

A conserved domain in exon 2 coding for the human and murine ARF tumor suppressor protein is required for autophagy induction.

Anna Budina-Kolomets, Robert D Hontz, Julia Pimkina, Maureen E Murphy

Open access · bronzeAbstract read
In one paragraph

Article in Autophagy, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed, 3 pooled it
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 3 syntheses or guidelines pooled it, 45 citations in OpenAlex.

  1. Pooled it
  2. Guideline
  3. Guideline
  4. Article
  5. Article
  6. Review
  7. Review
  8. Article
  9. Review
  10. Autophagy: Regulator of cell death.Cell death & disease · 2023
    Review
  11. Article
  12. Article
  13. The Multifaceted Role of Autophagy in Endometrium Homeostasis and Disease.Reproductive sciences (Thousand Oaks, Calif.) · 2022
    Review
  14. Article
  15. The Two-Faced Role of Autophagy in Endometrial Cancer.Frontiers in cell and developmental biology · 2022
    Review
  16. Review
  17. Review
  18. Article
  19. Antioxidants (Basel, Switzerland) · 2021
    Article
  20. NOP53 Suppresses Autophagy throughInternational journal of molecular sciences · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Anna Budina-KolometsProgram in Molecular and Cellular Oncogenesis; Wistar Institute; Philadelphia, PA USA.
Robert D HontzProgram in Molecular and Cellular Oncogenesis; Wistar Institute; Philadelphia, PA USA.
Julia PimkinaProgram in Molecular and Cellular Oncogenesis; Wistar Institute; Philadelphia, PA USA.
Maureen E MurphyProgram in Molecular and Cellular Oncogenesis; Wistar Institute; Philadelphia, PA USA.
Philadelphia University · USOrganogenesis (United States) · USThe Wistar Institute · US

Funding

Tumor Microenvironment and MetastasisP30CA010815 · NCI · WISTAR INSTITUTE · PI Luis J Montaner · 1985 to 2026
$75.9M
TRAINING PROGRAM IN CANCER RESEARCHT32CA009035 · NCI · RESEARCH INST OF FOX CHASE CAN CTR · PI CHERNOFF, JONATHAN · 1985 to 2020
$10.5M
Functional Analysis of p53 Polymorphic Variants - Diversity SupplementR01CA102184 · NCI · WISTAR INSTITUTE · PI Maureen E. Murphy · 2005 to 2026
$7.4M
The ARF Tumor SuppressorR01CA139319 · NCI · WISTAR INSTITUTE · PI MURPHY, MAUREEN E. · 2010 to 2019
$3.9M
NCI NIH HHS P30 CA10815NCI NIH HHS R01 CA102184NCI NIH HHS R01 CA139319NCI NIH HHS T32 CA009035
6 · The paper itself

Abstract

The ARF tumor suppressor, encoded by the CDKN2A gene, has a well-defined role regulating TP53 stability; this activity maps to exon 1β of CDKN2A. In contrast, little is known about the function(s) of exon 2 of ARF, which contains the majority of mutations in human cancer. In addition to controlling TP53 stability, ARF also has a role in the induction of autophagy. However, whether the principal molecule involved is full-length ARF, or a small molecular weight variant called smARF, has been controversial. Additionally, whether tumor-derived mutations in exon 2 of CDKN2A affect ARF's autophagy function is unknown. Finally, whereas it is known that silencing or inhibiting TP53 induces autophagy, the contribution of ARF to this induction is unknown. In this report we used multiple autophagy assays to map a region located in the highly conserved 5' end of exon 2 of CDKN2A that is necessary for autophagy induction by both human and murine ARF. We showed that mutations in exon 2 of CDKN2A that affect the coding potential of ARF, but not p16INK4a, all impair the ability of ARF to induce autophagy. We showed that whereas full-length ARF can induce autophagy, our combined data suggest that smARF instead induces mitophagy (selective autophagy of mitochondria), thus potentially resolving some confusion regarding the role of these variants. Finally, we showed that silencing Tp53 induces autophagy in an ARF-dependent manner. Our data indicated that a conserved domain in ARF mediates autophagy, and for the first time they implicate autophagy in ARF's tumor suppressor function.

Indexed as

AnimalsAutophagyCells, CulturedCyclin-Dependent Kinase Inhibitor p16HumansMiceMitochondriaMutationTumor Suppressor Protein p53Tumor Suppressor ProteinsCdkn2a protein, mouseCyclin-Dependent Kinase Inhibitor p16Tumor Suppressor Protein p53Tumor Suppressor Proteinsautophagymitochondriamitophagyp14ARFp19ARF

Identifiers

PMID23939042
PMCPMC4623555
OpenAlexW2024502954

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.