Evidence map›Paper›PMID 23939025›Full record

ArticleMolecular therapy : the journal of the American Society of Gene Therapy2013

Oversized AAV transductifon is mediated via a DNA-PKcs-independent, Rad51C-dependent repair pathway.

Matthew L Hirsch, Chengwen Li, Isabella Bellon, Chaoying Yin, Sai Chavala, Marina Pryadkina, Isabelle Richard, Richard Jude Samulski

Open access · bronzeAbstract read
In one paragraph

Article in Molecular therapy : the journal of the American Society of Gene Therapy, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
4.9field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 62 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. AAV vectors: The Rubik's cube of human gene therapy.Molecular therapy : the journal of the American Society of Gene Therapy · 2022
    Review
  10. Article
  11. Article
  12. Article
  13. Review
  14. Review
  15. Article
  16. DualHuman gene therapy · 2019
    Article
  17. Article
  18. Article
  19. Emerging Issues in AAV-MediatedMolecular therapy. Methods & clinical development · 2018
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Matthew L Hirsch1] Gene Therapy Center, University of North Carolina, Chapel Hill, North Carolina, USA [2] Department of Ophthalmology, University of North Carolina, Chapel Hill, North Carolina, USA.
Chengwen Li
Isabella Bellon
Chaoying Yin
Sai Chavala
Marina Pryadkina
Isabelle Richard
Richard Jude Samulski
University of North Carolina at Chapel Hill · USGenethon (France) · FRLaboratoire Analyse et Modélisation pour la Biologie et l'Environnement · FR

Funding

Virology Research Program (Program 4)P30CA016086 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Deborah F. Tate · 1985 to 2026
$201.5M
Training & EducationU54AR056953 · NIAMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI XIAO, XIAO · 2008 to 2012
$7.1M
Rational and Combinatorial Engineering of AAV VectorsR01AI072176 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI HIRSCH, MATTHEW LOUIS, SAMULSKI, RICHARD J · 2008 to 2017
$3.7M
AAV Gene Therapy for AAT DeficiencyR01DK084033 · NIDDK · UNIV OF NORTH CAROLINA CHAPEL HILL · PI LI, CHENGWEN · 2009 to 2016
$2.2M
CTL response to AAV VectorR01AI080726 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI LI, CHENGWEN, SAMULSKI, RICHARD J · 2010 to 2014
$1.8M
Regulation of adult ciliary body progenitor cells for cell replacement therapyK08EY021171 · NEI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI CHAVALA, SAI HEMANTH · 2011 to 2015
$1.2M
NCI NIH HHS P30 CA016086NEI NIH HHS K08 EY021171NIAID NIH HHS AI072176NIAID NIH HHS R01 AI072176NIAID NIH HHS R01 AI080726NIAMS NIH HHS U54 AR056953NIDDK NIH HHS DK084033NIDDK NIH HHS R01 DK084033
6 · The paper itself

Abstract

A drawback of gene therapy using adeno-associated virus (AAV) is the DNA packaging restriction of the viral capsid (<4.7 kb). Recent observations demonstrate oversized AAV genome transduction through an unknown mechanism. Herein, AAV production using an oversized reporter (6.2 kb) resulted in chloroform and DNase-resistant particles harboring distinct "fragment" AAV (fAAV) genomes (5.0, 2.4, and 1.6 kb). Fractionation experiments determined that only the larger "fragments" mediated transduction in vitro, and relatively efficient transduction was also demonstrated in the muscle, the eye, and the liver. In contrast with concatemerization-dependent large-gene delivery by split AAV, fAAV transduction is independent of the catalytic subunit of DNA-dependent protein kinase (DNA-PKcs) in vitro and in vivo while disproportionately reliant on the DNA strand-annealing protein Rad51C. Importantly, fAAV's unique dependence on DNA repair proteins, compared with intact AAV, strongly suggests that the majority of oversized AAV transduction is mediated by fragmented genomes. Although fAAV transduction is less efficient than intact AAV, it is enhanced fourfold in muscle and sevenfold in the retina compared with split AAV transduction. Furthermore, fAAV carrying codon-optimized therapeutic dysferlin cDNA in a 7.5 kb expression cassette restored dysferlin levels in a dystrophic model. Collectively, oversized AAV genome transduction requires unique DNA repair pathways and offers an alternative, more efficient strategy for large-gene therapy.

Indexed as

Genetic TherapyTransduction, GeneticAnimalsCapsidCHO CellsCricetulusDependovirusDisease Models, AnimalDNA-Binding ProteinsDNA PackagingDNA, ViralEyeGenes, ReporterGenetic VectorsGenome, ViralHEK293 CellsDNA-Binding ProteinsDNA, ViralMuscle ProteinsRad51 RecombinaseX-ray repair cross complementing protein 3

Identifiers

PMID23939025
PMCPMC3863795
OpenAlexW2125901877

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.