Evidence map›Paper›PMID 23937570›Full record

ArticleThe journal of physical chemistry. B2013

Measuring the orientation of taurine in the active site of the non-heme Fe(II)/α-ketoglutarate-dependent taurine hydroxylase (TauD) using electron spin echo envelope modulation (ESEEM) spectroscopy.

Thomas M Casey, Piotr K Grzyska, Robert P Hausinger, John McCracken

Open access · greenAbstract read
In one paragraph

Article in The journal of physical chemistry. B, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Article
  3. Cyanide replaces substrate in obligate-ordered addition of nitric oxide to the non-heme mononuclear iron AvMDO active site.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2023
    Article
  4. Article
  5. Applied magnetic resonance · 2021
    Article
  6. Article
  7. Article
  8. Article
  9. Spectroscopic analyses of 2-oxoglutarate-dependent oxygenases: TauD as a case study.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2017
    Review
  10. Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Thomas M CaseyDepartment of Chemistry, ‡Department of Microbiology and Molecular Genetics, and Department of Biochemistry and Molecular Biology, Michigan State University , East Lansing, Michigan, 48824.
Piotr K Grzyska
Robert P Hausinger
John McCracken
Michigan State University · US

Funding

Study of alpha-ketoglutarate-dependent dioxygenasesR01GM063584 · NIGMS · MICHIGAN STATE UNIVERSITY · PI HAUSINGER, ROBERT P · 2002 to 2014
$3.8M
94 GHZ/9 GHZ CONTINUOUS WAVE AND PULSED EPR SPECTROMETERS10RR015880 · NCRR · MICHIGAN STATE UNIVERSITY · PI MCCRACKEN, JOHN L · 2001 to 2001
$500k
NCRR NIH HHS S10 RR015880NIGMS NIH HHS GM063584NIGMS NIH HHS R01 GM063584
6 · The paper itself

Abstract

The position and orientation of taurine near the non-heme Fe(II) center of the α-ketoglutarate (α-KG)-dependent taurine hydroxylase (TauD) was measured using Electron Spin Echo Envelope Modulation (ESEEM) spectroscopy. TauD solutions containing Fe(II), α-KG, and natural abundance taurine or specifically deuterated taurine were prepared anaerobically and treated with nitric oxide (NO) to make an S = 3/2 {FeNO}(7) complex that is suitable for robust analysis with EPR spectroscopy. Using ratios of ESEEM spectra collected for TauD samples having natural abundance taurine or deuterated taurine, (1)H and (14)N modulations were filtered out of the spectra and interactions with specific deuterons on taurine could be studied separately. The Hamiltonian parameters used to calculate the amplitudes and line shapes of frequency spectra containing isolated deuterium ESEEM were obtained with global optimization algorithms. Additional statistical analysis was performed to validate the interpretation of the optimized parameters. The strongest (2)H hyperfine coupling was to a deuteron on the C1 position of taurine and was characterized by an effective dipolar distance of 3.90 ± 0.25 Å from the {FeNO}(7) paramagnetic center. The principal axes of this C1-(2)H hyperfine coupling and nuclear quadrupole interaction tensors were found to make angles of 26 ± 5 and 52 ± 17°, respectively, with the principal axis of the {FeNO}(7) zero-field splitting tensor. These results are discussed within the context of the orientation of substrate taurine prior to the initiation of hydrogen abstraction.

Indexed as

AlgorithmsBiocatalysisCatalytic DomainCoordination ComplexesDeuteriumElectron Spin Resonance SpectroscopyFerrous CompoundsKetoglutaric AcidsMixed Function OxygenasesNitric OxideTaurineCoordination ComplexesDeuteriumFerrous CompoundsKetoglutaric AcidsMixed Function OxygenasesNitric OxideTaurinetaurine-alpha-ketoglutarate dioxygenase

Identifiers

PMID23937570
PMCPMC3854568
OpenAlexW2029527579

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.