Evidence map›Paper›PMID 23937194›Full record

ArticleBMC bioinformatics2013

4273π: bioinformatics education on low cost ARM hardware.

Daniel Barker, David Ek Ferrier, Peter Wh Holland, John Bo Mitchell, Heleen Plaisier, Michael G Ritchie, Steven D Smart

Open access · goldAbstract read
In one paragraph

Article in BMC bioinformatics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.0field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
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  4. Ten quick tips for using a Raspberry Pi.PLoS computational biology · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Daniel BarkerSir Harold Mitchell Building, School of Biology, University of St Andrews, St Andrews, Fife KY16 9TH, UK. db60@st-andrews.ac.uk
David Ek Ferrier
Peter Wh Holland
John Bo Mitchell
Heleen Plaisier
Michael G Ritchie
Steven D Smart
University of St Andrews · GBSands · GBUniversity of Oxford · GB

Funding

Biotechnology and Biological Sciences Research Council BB/I00596X/1
6 · The paper itself

Abstract

backgroundTeaching bioinformatics at universities is complicated by typical computer classroom settings. As well as running software locally and online, students should gain experience of systems administration. For a future career in biology or bioinformatics, the installation of software is a useful skill. We propose that this may be taught by running the course on GNU/Linux running on inexpensive Raspberry Pi computer hardware, for which students may be granted full administrator access.

resultsWe release 4273π, an operating system image for Raspberry Pi based on Raspbian Linux. This includes minor customisations for classroom use and includes our Open Access bioinformatics course, 4273π Bioinformatics for Biologists. This is based on the final-year undergraduate module BL4273, run on Raspberry Pi computers at the University of St Andrews, Semester 1, academic year 2012-2013.

conclusions4273π is a means to teach bioinformatics, including systems administration tasks, to undergraduates at low cost.

Indexed as

StudentsUniversitiesBiologyComputational BiologyComputersHumansSoftwareTeaching MaterialsTextbooks as Topic

Identifiers

PMID23937194
PMCPMC3751261
OpenAlexW2166475603

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.