ArticlePloS one2013
Systematic analysis and comparison of nucleotide-binding site disease resistance genes in a diploid cotton Gossypium raimondii.
Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers, 1 of them a synthesis that pooled it.
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26 citing papers in PubMed, 1 synthesis or guideline pooled it, 42 citations in OpenAlex.
- Genetic analysis of Verticillium wilt resistance in a backcross inbred line population and a meta-analysis of quantitative trait loci for disease resistance in cotton.BMC genomics · 2015Pooled it
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- Distinct Evolutionary Patterns of NBS-Encoding Genes in Three Soapberry Family (Sapindaceae) Species.Frontiers in genetics · 2020Article
- The Gossypium hirsutum TIR-NBS-LRR gene GhDSC1 mediates resistance against Verticillium wilt.Molecular plant pathology · 2019Article
- Variation in abundance of predicted resistance genes in the Brassica oleracea pangenome.Plant biotechnology journal · 2019Article
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- Regulation and Evolution of NLR Genes: A Close Interconnection for Plant Immunity.International journal of molecular sciences · 2018Review
- Genomic and epigenomic immunity in common bean: the unusual features of NB-LRR gene family.DNA research : an international journal for rapid publication of reports on genes and genomes · 2018Article
- Systematic Analysis of Cotton Non-specific Lipid Transfer Protein Family Revealed a Special Group That Is Involved in Fiber Elongation.Frontiers in plant science · 2018Article
- Molecular Characterization, Evolution, and Expression Profiling of theFrontiers in genetics · 2018Article
- Genome-wide identification and tissue-specific expression analysis of nucleotide binding site-leucine rich repeat gene family inGenomics data · 2017Article
- Characterization and analysis ofBiology open · 2017Article
- Distinct Patterns of Gene Gain and Loss: Diverse Evolutionary Modes of NBS-Encoding Genes in Three Solanaceae Crop Species.G3 (Bethesda, Md.) · 2017Article
- Genome-wide comparative analysis of NBS-encoding genes in four Gossypium species.BMC genomics · 2017Article
- Genome-Wide Identification and Expression Analysis of the Biotin Carboxyl Carrier Subunits of Heteromeric Acetyl-CoA Carboxylase inFrontiers in plant science · 2017Article
- Overexpression ofFrontiers in plant science · 2017Article
- Sequencing and characterization of leaf transcriptomes of six diploid Nicotiana species.Journal of biological research (Thessalonike, Greece) · 2016Article
- Dramatic Number Variation of R Genes in Solanaceae Species Accounted for by a Few R Gene Subfamilies.PloS one · 2016Article
- Disease Resistance Gene Analogs (RGAs) in Plants.International journal of molecular sciences · 2015Review
- Genome-wide analysis of the gene families of resistance gene analogues in cotton and their response to Verticillium wilt.BMC plant biology · 2015Article
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Authors and funding
5 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Plant disease resistance genes are a key component of defending plants from a range of pathogens. The majority of these resistance genes belong to the super-family that harbors a Nucleotide-binding site (NBS). A number of studies have focused on NBS-encoding genes in disease resistant breeding programs for diverse plants. However, little information has been reported with an emphasis on systematic analysis and comparison of NBS-encoding genes in cotton. To fill this gap of knowledge, in this study, we identified and investigated the NBS-encoding resistance genes in cotton using the whole genome sequence information of Gossypium raimondii. Totally, 355 NBS-encoding resistance genes were identified. Analyses of the conserved motifs and structural diversity showed that the most two distinct features for these genes are the high proportion of non-regular NBS genes and the high diversity of N-termini domains. Analyses of the physical locations and duplications of NBS-encoding genes showed that gene duplication of disease resistance genes could play an important role in cotton by leading to an increase in the functional diversity of the cotton NBS-encoding genes. Analyses of phylogenetic comparisons indicated that, in cotton, the NBS-encoding genes with TIR domain not only have their own evolution pattern different from those of genes without TIR domain, but also have their own species-specific pattern that differs from those of TIR genes in other plants. Analyses of the correlation between disease resistance QTL and NBS-encoding resistance genes showed that there could be more than half of the disease resistance QTL associated to the NBS-encoding genes in cotton, which agrees with previous studies establishing that more than half of plant resistance genes are NBS-encoding genes.
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