Evidence map›Paper›PMID 23935956›Full record

ArticlePloS one2013

Genome wide association analysis of a founder population identified TAF3 as a gene for MCHC in humans.

Giorgio Pistis, Shawntel U Okonkwo, Michela Traglia, Cinzia Sala, So-Youn Shin, Corrado Masciullo, Iwan Buetti, Roberto Massacane, Massimo Mangino, Swee-Lay Thein and 10 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers, 5 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed, 5 pooled it
0.7field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 5 syntheses or guidelines pooled it, 14 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Pooled it
  5. Pooled it
  6. Article
  7. Review
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 10 institutions in 3 countries.

Giorgio PistisDivision of Genetics and Cell Biology, San Raffaele Research Institute and Vita Salute University, Milano, Italy.
Shawntel U Okonkwo
Michela Traglia
Cinzia Sala
So-Youn Shin
Corrado Masciullo
Iwan Buetti
Roberto Massacane
Massimo Mangino
Swee-Lay Thein
Timothy D Spector
Santhi Ganesh
CHARGE Consortium Hematology Working
Nicola Pirastu
Paolo Gasparini
Nicole Soranzo
Clara Camaschella
Daniel Hart
Michael R Green
Daniela Toniolo
Vita-Salute San Raffaele University · ITKing's College London · GBUniversity of California, San Francisco · USWellcome Sanger Institute · GBCTO Andrea Alesini · ITHoward Hughes Medical Institute · USIRCCS Materno Infantile Burlo Garofolo · ITIstituto di Genetica Molecolare · ITMichigan United · USUniversity of Trieste · IT

Funding

UPGRADE OF COMMUNICATIONS INFRASTRUCTURET34GM008574 · NIGMS · SAN FRANCISCO STATE UNIVERSITY · PI BAYLISS, FRANK T, ESQUERRA, RAYMOND M. · 1996 to 2021
$14.5M
CHARGE Consortium: Omics Discovery for CVD and Aging PhenotypesR01HL105756 · NHLBI · UNIVERSITY OF WASHINGTON · PI Bruce M Psaty, NICHOLAS L SMITH · 2011 to 2026
$9.5M
CLINICAL PROJECT: Age, Gene/Environment Susceptibility Study on the Multi-omics of Aging: A clinical epidemiologic prospective studyZIAAG007380 · NIA · NATIONAL INSTITUTE ON AGING · PI LAUNER, LENORE J · 2009 to 2025
$6.1M
TRANSCRIPTIONAL ACTIVATION BY THE ADENOVIRUS ELA PROTEINR01GM033977 · NIGMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI GREEN, MICHAEL R · 1985 to 2013
$3.2M
HISPANIC SECONDARY STROKE PREVENTION INITIATIVER01MD009164 · NIMHD · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI CARRASQUILLO, OLVEEN · 2014 to 2018
$1.9M
Genetic analysis of AGES-Reykjavik Study and the Health ABCZIAAG006000 · NIA · NATIONAL INSTITUTE ON AGING · PI HARRIS, TAMARA · 2009 to 2017
$1.3M
AGES STUDY-THE REYKJAVIK STUDY OF HEALTHY AGING FOR THE NEW MILLENNIUM-26012100N01AG012100 · NIA · ICELANDIC HEART ASSOCIATION · 2002 to 2004
–
Biotechnology and Biological Sciences Research CouncilIntramural NIH HHSMedical Research Council G0000111NHLBI NIH HHS R01 HL105756NIA NIH HHS N01.AG. 12100NIA NIH HHS N01.AG. 821336NIA NIH HHS N01.AG.916413NIGMS NIH HHS R01 GM033977NIGMS NIH HHS R01GM033977NIGMS NIH HHS T34 GM008574NIMHD NIH HHS 263 MD 821336NIMHD NIH HHS 263 MD 9164 13NIMHD NIH HHS R01 MD009164Wellcome Trust
6 · The paper itself

Abstract

The red blood cell related traits are highly heritable but their genetics are poorly defined. Only 5-10% of the total observed variance is explained by the genetic loci found to date, suggesting that additional loci should be searched using approaches alternative to large meta analysis. GWAS (Genome Wide Association Study) for red blood cell traits in a founder population cohort from Northern Italy identified a new locus for mean corpuscular hemoglobin concentration (MCHC) in the TAF3 gene. The association was replicated in two cohorts (rs1887582, P = 4.25E-09). TAF3 encodes a transcription cofactor that participates in core promoter recognition complex, and is involved in zebrafish and mouse erythropoiesis. We show here that TAF3 is required for transcription of the SPTA1 gene, encoding alpha spectrin, one of the proteins that link the plasma membrane to the actin cytoskeleton. Mutations in SPTA1 are responsible for hereditary spherocytosis, a monogenic disorder of MCHC, as well as for the normal MCHC level. Based on our results, we propose that TAF3 is required for normal erythropoiesis in human and that it might have a role in controlling the ratio between hemoglobin (Hb) and cell volume and in the dynamics of RBC maturation in healthy individuals. Finally, TAF3 represents a potential candidate or a modifier gene for disorders of red cell membrane.

Indexed as

Founder EffectAnimalsCell Line, TumorChromatin ImmunoprecipitationCohort StudiesErythrocyte IndicesErythrocytesErythropoiesisGene Expression RegulationGenome-Wide Association StudyHemoglobinsHumansItalyK562 CellsPolymorphism, Single NucleotidePromoter Regions, GeneticHemoglobinsSpectrinTAF3 protein, humanTATA-Binding Protein Associated FactorsTranscription Factor TFIID

Identifiers

PMID23935956
PMCPMC3729833
OpenAlexW2066497150

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.