Evidence map›Paper›PMID 23935531›Full record

ArticlePLoS genetics2013

Origin and functional diversification of an amphibian defense peptide arsenal.

Kim Roelants, Bryan G Fry, Lumeng Ye, Benoit Stijlemans, Lea Brys, Philippe Kok, Elke Clynen, Liliane Schoofs, Pierre Cornelis, Franky Bossuyt

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
5.0field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 57 citations in OpenAlex.

  1. Article
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  5. Activity and Synergy of Cu-ATCUN Antimicrobial Peptides.International journal of molecular sciences · 2022
    Article
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  7. Review
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  9. Quantity - but not diversity - of secreted peptides and proteins increases with age in the tree frogThe journal of venomous animals and toxins including tropical diseases · 2021
    Article
  10. Immunological Aspects of Chytridiomycosis.Journal of fungi (Basel, Switzerland) · 2020
    Review
  11. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 2 countries.

Kim RoelantsAmphibian Evolution Lab, Biology Department, Vrije Universiteit Brussel, Brussels, Belgium. kroelant@vub.ac.be
Bryan G Fry
Lumeng Ye
Benoit Stijlemans
Lea Brys
Philippe Kok
Elke Clynen
Liliane Schoofs
Pierre Cornelis
Franky Bossuyt
Vrije Universiteit Brussel · BEHasselt University · BEKU Leuven · BEUniversity of Queensland · AUVIB-VUB Laboratory Myeloid Cell Immunology · BE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The skin secretion of many amphibians contains an arsenal of bioactive molecules, including hormone-like peptides (HLPs) acting as defense toxins against predators, and antimicrobial peptides (AMPs) providing protection against infectious microorganisms. Several amphibian taxa seem to have independently acquired the genes to produce skin-secreted peptide arsenals, but it remains unknown how these originated from a non-defensive ancestral gene and evolved diverse defense functions against predators and pathogens. We conducted transcriptome, genome, peptidome and phylogenetic analyses to chart the full gene repertoire underlying the defense peptide arsenal of the frog Silurana tropicalis and reconstruct its evolutionary history. Our study uncovers a cluster of 13 transcriptionally active genes, together encoding up to 19 peptides, including diverse HLP homologues and AMPs. This gene cluster arose from a duplicated gastrointestinal hormone gene that attained a HLP-like defense function after major remodeling of its promoter region. Instead, new defense functions, including antimicrobial activity, arose by mutation of the precursor proteins, resulting in the proteolytic processing of secondary peptides alongside the original ones. Although gene duplication did not trigger functional innovation, it may have subsequently facilitated the convergent loss of the original function in multiple gene lineages (subfunctionalization), completing their transformation from HLP gene to AMP gene. The processing of multiple peptides from a single precursor entails a mechanism through which peptide-encoding genes may establish new functions without the need for gene duplication to avoid adaptive conflicts with older ones.

Indexed as

Evolution, MolecularAmino Acid SequenceAnimalsAntimicrobial Cationic PeptidesAnuraGene Expression ProfilingGenetic VariationGenomePeptidesPhylogenySequence AlignmentSkinAntimicrobial Cationic PeptidesPeptides

Identifiers

PMID23935531
PMCPMC3731216
OpenAlexW2081522980

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.