Evidence map›Paper›PMID 23934880›Full record

ArticleGenetics2013

Accumulation of spontaneous mutations in the ciliate Tetrahymena thermophila.

Hong-An Long, Tiago Paixão, Ricardo B R Azevedo, Rebecca A Zufall

Abstract read
In one paragraph

Article in Genetics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Article
  2. Article
  3. Annual review of genetics · 2023
    Review
  4. Experimental Evolution inMicroorganisms · 2022
    Review
  5. Article
  6. Article
  7. Article
  8. Evolutionary origins and impacts of genome architecture in ciliates.Annals of the New York Academy of Sciences · 2019
    Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Hong-An LongDepartment of Biology and Biochemistry, University of Houston, Houston, Texas 77204-5001.
Tiago Paixão
Ricardo B R Azevedo
Rebecca A Zufall

Funding

Mutation accumulation in the ciliate Tetrahymena thermophilaR01GM101352 · NIGMS · UNIVERSITY OF HOUSTON · PI ZUFALL, REBECCA · 2013 to 2017
$1.4M
European Research Council 250152NIGMS NIH HHS R01 GM101352NIGMS NIH HHS R01GM101352
6 · The paper itself

Abstract

Knowledge of the rate and fitness effects of mutations is essential for understanding the process of evolution. Mutations are inherently difficult to study because they are rare and are frequently eliminated by natural selection. In the ciliate Tetrahymena thermophila, mutations can accumulate in the germline genome without being exposed to selection. We have conducted a mutation accumulation (MA) experiment in this species. Assuming that all mutations are deleterious and have the same effect, we estimate that the deleterious mutation rate per haploid germline genome per generation is U=0.0047 (95% credible interval: 0.0015, 0.0125), and that germline mutations decrease fitness by s=11% when expressed in a homozygous state (95% CI: 4.4%, 27%). We also estimate that deleterious mutations are partially recessive on average (h=0.26; 95% CI: -0.022, 0.62) and that the rate of lethal mutations is <10% of the deleterious mutation rate. Comparisons between the observed evolutionary responses in the germline and somatic genomes and the results from individual-based simulations of MA suggest that the two genomes have similar mutational parameters. These are the first estimates of the deleterious mutation rate and fitness effects from the eukaryotic supergroup Chromalveolata and are within the range of those of other eukaryotes.

Indexed as

Genetic FitnessEukaryotaEvolution, MolecularGenomeGerm-Line MutationHomozygoteMutationMutation RateSelection, GeneticSequence DeletionTetrahymena thermophiladeleterious mutation ratedominancelethal mutationsmutational robustnessprotist

Identifiers

PMID23934880
PMCPMC3781978

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.