Evidence map›Paper›PMID 23933962›Full record

ArticleMolecular genetics and genomics : MGG2013

Genomic comparison of Salmonella typhimurium DT104 with non-DT104 strains.

Er-Ying Zhao, Hong-Xia Bao, Le Tang, Qing-Hua Zou, Wei-Qiao Liu, Da-Ling Zhu, Jessica Chin, Ying-Ying Dong, Yong-Guo Li, Feng-Lin Cao and 6 more

Abstract readComparative Study
PubMed Publisher
In one paragraph

Article in Molecular genetics and genomics : MGG, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.5field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 4 citations in OpenAlex.

  1. Genomic Characterization ofPathogens (Basel, Switzerland) · 2021
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 6 institutions in 3 countries.

Er-Ying ZhaoGenomics Research Center (one of The State-Province Key Laboratories of Biomedicine-Pharmaceutics of China), Harbin Medical University, 157 Baojian Road, 150081, Harbin, China.
Hong-Xia Bao
Le Tang
Qing-Hua Zou
Wei-Qiao Liu
Da-Ling Zhu
Jessica Chin
Ying-Ying Dong
Yong-Guo Li
Feng-Lin Cao
Cornelis Poppe
Kenneth E Sanderson
Randal N Johnston
Daoguo Zhou
Gui-Rong Liu
Shu-Lin Liu
Harbin Medical University · CNUniversity of Calgary · CAFirst Affiliated Hospital of Harbin Medical University · CNPeking University · CNPublic Health Agency of Canada · CAPurdue University West Lafayette · US

Funding

PHS HHS 81161120416
6 · The paper itself

Abstract

DT104 emerged as a new branch of Salmonella typhimurium with resistance to multiple antimicrobials. To reveal some general genomic features of DT104 for clues of evolutionary events possibly associated with the emergence of this relatively new type of this pathogen, we mapped 11 independent DT104 strains and compared them with non-DT104 S. typhimurium strains. We found that all 11 DT104 strains contained three insertions absent in non-DT104 strains, i.e., the previously reported ST104, ST104B and ST64B. However, SGI-1, a genomic island known to be responsible for DT104 multidrug resistance, was not present in all DT104 strains examined in this study: one DT104 strain did not contain SGI-1 but carried a 144 kb plasmid, suggesting possible evolutionary relationships between the two DNA elements in the development of antimicrobial resistance.

Indexed as

GenomicsBiological EvolutionChromosome MappingDeoxyribonucleases, Type II Site-SpecificDNA, BacterialDrug Resistance, Multiple, BacterialEndodeoxyribonucleasesGene RearrangementGenome, BacterialGenomic IslandsPlasmidsSalmonella InfectionsSalmonella typhimuriumSpecies SpecificityCCTAGG-specific type II deoxyribonucleasesDeoxyribonucleases, Type II Site-SpecificDNA, Bacterialendodeoxyribonuclease I-CeuIEndodeoxyribonucleasesendodeoxyribonuclease XBAI

Identifiers

PMID23933962
OpenAlexW1993539005

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.