Evidence map›Paper›PMID 23933087›Full record

ArticleCell stem cell2013

The BAF complex interacts with Pax6 in adult neural progenitors to establish a neurogenic cross-regulatory transcriptional network.

Jovica Ninkovic, Andrea Steiner-Mezzadri, Melanie Jawerka, Umut Akinci, Giacomo Masserdotti, Stefania Petricca, Judith Fischer, Alexander von Holst, Johanes Beckers, Chichung D Lie and 12 more

Open access · bronzeAbstract read
In one paragraph

Article in Cell stem cell, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 130 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
130citing papers in PubMed, 1 pooled it
12.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

130 citing papers in PubMed, 1 synthesis or guideline pooled it, 215 citations in OpenAlex.

  1. Pooled it
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  15. Article
  16. Chromatin remodeling in tissue stem cell fate determination.Cell regeneration (London, England) · 2024
    Review
  17. Article
  18. Article
  19. Article
  20. Epigenetic regulation in adult neural stem cells.Frontiers in cell and developmental biology · 2024
    Review

70 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

22 authors at 9 institutions in 4 countries.

Jovica NinkovicInstitute for Stem Cell Research, Helmholtz Centre Munich German Research Center for Environmental Health (GmbH), 85764 Neuherberg, Germany; Physiological Genomics, Medical Faculty, University of Munich, Schillerstrasse 46, 80633 Munich, Germany.
Andrea Steiner-Mezzadri
Melanie Jawerka
Umut Akinci
Giacomo Masserdotti
Stefania Petricca
Judith Fischer
Alexander von Holst
Johanes Beckers
Chichung D Lie
David Petrik
Erik Miller
Jiong Tang
Jiang Wu
Veronique Lefebvre
Jeroen Demmers
Amelia Eisch
Daniel Metzger
Gerald Crabtree
Martin Irmler
Raymond Poot
Magdalena Götz
Helmholtz Zentrum München · DESouthwestern Medical CenterStanford University · USErasmus University Rotterdam · NLCleveland Clinic Lerner College of Medicine · USErasmus MC · NLHeidelberg University · DEUniversité de Strasbourg · FRWeihenstephan-Triesdorf University of Applied Sciences · DE

Funding

Clinical and Translational Science Collaborative of ClevelandUL1TR000439 · NCATS · CASE WESTERN RESERVE UNIVERSITY · PI KONSTAN, MICHAEL W. · 2012 to 2016
$50.0M
Regulation of adult neurogenesis by opiatesR01DA016765 · NIDA · UT SOUTHWESTERN MEDICAL CENTER · PI EISCH, AMELIA J · 2004 to 2013
$4.0M
ROLES OF SOX C GENES IN SKELETOGENESISR01AR054153 · NIAMS · CLEVELAND CLINIC LERNER COM-CWRU · PI LEFEBVRE, VERONIQUE M · 2006 to 2010
$1.6M
New Horizons in Adult NeurogenesisK02DA023555 · NIDA · UT SOUTHWESTERN MEDICAL CENTER · PI EISCH, AMELIA J · 2007 to 2017
$1.1M
NCATS NIH HHS UL1 TR000439NIAMS NIH HHS R01 AR054153NIDA NIH HHS K02 DA023555NIDA NIH HHS R01 DA016765
6 · The paper itself

Abstract

Numerous transcriptional regulators of neurogenesis have been identified in the developing and adult brain, but how neurogenic fate is programmed at the epigenetic level remains poorly defined. Here, we report that the transcription factor Pax6 directly interacts with the Brg1-containing BAF complex in adult neural progenitors. Deletion of either Brg1 or Pax6 in the subependymal zone (SEZ) causes the progeny of adult neural stem cells to convert to the ependymal lineage within the SEZ while migrating neuroblasts convert to different glial lineages en route to or in the olfactory bulb (OB). Genome-wide analyses reveal that the majority of genes downregulated in the Brg1 null SEZ and OB contain Pax6 binding sites and are also downregulated in Pax6 null SEZ and OB. Downstream of the Pax6-BAF complex, we find that Sox11, Nfib, and Pou3f4 form a transcriptional cross-regulatory network that drives neurogenesis and can convert postnatal glia into neurons. Taken together, elements of our work identify a tripartite effector network activated by Pax6-BAF that programs neuronal fate.

Indexed as

Gene Regulatory NetworksAdult Stem CellsAnimalsDown-RegulationEye ProteinsHomeodomain ProteinsMiceNeural Stem CellsNeuronsPaired Box Transcription FactorsPAX6 Transcription FactorRepressor ProteinsTranscription FactorsEye ProteinsHomeodomain ProteinsPaired Box Transcription FactorsPax6 protein, mousePAX6 Transcription FactorRepressor ProteinsSmarcc1 protein, mouseTranscription Factors

Identifiers

PMID23933087
PMCPMC4098720
OpenAlexW1974203453

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.