Evidence map›Paper›PMID 23928310›Full record

ReviewThe Journal of biological chemistry2013

Heme-based globin-coupled oxygen sensors: linking oxygen binding to functional regulation of diguanylate cyclase, histidine kinase, and methyl-accepting chemotaxis.

Markéta Martínková, Kenichi Kitanishi, Toru Shimizu

Open access · hybridAbstract readReview
In one paragraph

Review in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
4.6field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 83 citations in OpenAlex.

  1. Article
  2. Article
  3. Immunoblot-based activity assay for heme-containing histidine kinases.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2026
    Article
  4. Review
  5. Article
  6. Review
  7. Review
  8. Applications of the Whole-Cell System in the Efficient Biosynthesis of Heme.International journal of molecular sciences · 2023
    Review
  9. Article
  10. Article
  11. Comparative genomic analysis ofFrontiers in microbiology · 2023
    Article
  12. Review
  13. Review
  14. Heat Shock Proteins and Ferroptosis.Frontiers in cell and developmental biology · 2022
    Review
  15. Article
  16. Differential ligand-selective control of opposing enzymatic activities within a bifunctional c-di-GMP enzyme.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  17. Ultrafast dynamics of heme distortion in the OCommunications chemistry · 2021
    Article
  18. Structural modeling of a novel membrane-bound globin-coupled sensor inComputational and structural biotechnology journal · 2021
    Article
  19. Review
  20. Distinctive structural properties of THB11, a pentacoordinate Chlamydomonas reinhardtii truncated hemoglobin with N- and C-terminal extensions.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 3 countries.

Markéta MartínkováFrom the Department of Biochemistry, Faculty of Science, Charles University in Prague, 128 43 Prague 2, Czech Republic.
Kenichi Kitanishi
Toru Shimizu
Charles University · CZUniversity of Michigan–Ann Arbor · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

An emerging class of novel heme-based oxygen sensors containing a globin fold binds and senses environmental O2 via a heme iron complex. Structure-function relationships of oxygen sensors containing a heme-bound globin fold are different from those containing heme-bound PAS and GAF folds. It is thus worth reconsidering from an evolutionary perspective how heme-bound proteins with a globin fold similar to that of hemoglobin and myoglobin could act as O2 sensors. Here, we summarize the molecular mechanisms of heme-based oxygen sensors containing a globin fold in an effort to shed light on the O2-sensing properties and O2-stimulated catalytic enhancement observed for these proteins.

Indexed as

Gene Expression Regulation, EnzymologicAmino Acid SequenceAzotobacter vinelandiiBinding SitesBordetella pertussisCatalysisCatalytic DomainChemotaxisEscherichia coliEscherichia coli ProteinsEvolution, MolecularGlobinsHemeHemoglobinsHistidine KinaseMolecular Sequence Datadiguanylate cyclaseEscherichia coli ProteinsGlobinsHemeHemoglobinsHistidine KinaseMyoglobinOxygenPhosphorus-Oxygen LyasesProtein KinasesChemotaxisCyclic GMP (cGMP)HemeHemoglobinHistidine KinasesMyoglobinOxygen Binding

Identifiers

PMID23928310
PMCPMC3784688
OpenAlexW2116901179

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.