Evidence map›Paper›PMID 23926186›Full record

ArticleAmerican journal of physiology. Renal physiology2013

Focal segmental glomerulosclerosis is associated with a PDSS2 haplotype and, independently, with a decreased content of coenzyme Q10.

David L Gasser, Cheryl A Winkler, Min Peng, Ping An, Louise M McKenzie, Gregory D Kirk, Yuchen Shi, Letian X Xie, Beth N Marbois, Catherine F Clarke and 1 more

Open access · greenAbstract read
In one paragraph

Article in American journal of physiology. Renal physiology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
2.7field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 44 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Collapsing Glomerulopathy.Advances in kidney disease and health · 2024
    Review
  5. Review
  6. Mechanisms of podocyte injury and implications for diabetic nephropathy.Clinical science (London, England : 1979) · 2022
    Article
  7. Review
  8. Article
  9. Review
  10. The complicated role of mitochondria in the podocyte.American journal of physiology. Renal physiology · 2020
    Article
  11. Article
  12. Review
  13. Review
  14. Article
  15. Article
  16. Review
  17. Review
  18. Biochemistry of Mitochondrial Coenzyme Q Biosynthesis.Trends in biochemical sciences · 2017
    Review
  19. A Personalized Model ofJournal of the American Society of Nephrology : JASN · 2017
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 6 institutions in 1 country.

David L GasserDept. of Genetics, Univ. of Pennsylvania School of Medicine, 415 Curie Blvd., Philadelphia, PA 19104. gasserd@mail.med.upenn.edu.
Cheryl A Winkler
Min Peng
Ping An
Louise M McKenzie
Gregory D Kirk
Yuchen Shi
Letian X Xie
Beth N Marbois
Catherine F Clarke
Jeffrey B Kopp
University of California, Los Angeles · USCenter for Cancer Research · USUniversity of Pennsylvania · USJohns Hopkins University · USNational Institutes of Health · USScience Applications International Corporation (United States) · US

Funding

The AIDS Linked to the Intravenous Experience (ALIVE) StudyU01DA036297 · NIDA · JOHNS HOPKINS UNIVERSITY · PI Gregory D Kirk, Shruti H Mehta · 2014 to 2026
$28.9M
UCLA NIGMS T32 Program AssessmentT32GM007185 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI TORRES, JORGE · 1985 to 2020
$21.7M
Focal Segmental Glomerulosclerosis: Genetics & MechanismsZIADK043308 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI KOPP, JEFFREY BURNETT · 2009 to 2024
$15.7M
INCIDENCE OF HIV INFECTIONS IN A COHORT OF IV DRUG USERSR01DA012568 · NIDA · JOHNS HOPKINS UNIVERSITY · PI MEHTA, SHRUTI H · 1999 to 2017
$15.5M
Genetics of Renal Disease in African AmericansZIABC010022 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI WINKLER, CHERYL · 2009 to 2022
$8.9M
THE NATURAL HISTORY OF HIV INFECTION AMONG DRUG USERSR01DA004334 · NIDA · JOHNS HOPKINS UNIVERSITY · PI KIRK, GREGORY D · 1987 to 2011
$7.6M
SPONTANEOUS TUBULOINTERSTITAL NEPHRITIS IN KDKD MICER01DK055852 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI GASSER, DAVID L · 2000 to 2012
$4.5M
FUNCTIONAL ROLES OF UBIQUINONE IN YEAST AND HUMAN CELLSR01GM045952 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI CLARKE, CATHERINE FREITAG · 1991 to 2009
$3.2M
LC-Triple Quadrupole Mass Spectrometer to Enhance LIfe Sciences ResearchS10RR024605 · NCRR · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI LOO, JOSEPH A · 2007 to 2007
$424k
NCI NIH HHS N01 CO-12400NCRR NIH HHS S10 RR-024605NIDA NIH HHS R01 DA012568NIDA NIH HHS R01-DA-04334NIDA NIH HHS U01 DA036297NIDDK NIH HHS R01 DK055852NIDDK NIH HHS R01 DK-55852NIGMS NIH HHS GM-007185NIGMS NIH HHS R01 GM045952NIGMS NIH HHS R01 GM-45952PHS HHS HHSN26120080001E
6 · The paper itself

Abstract

Focal segmental glomerulosclerosis (FSGS) and collapsing glomerulopathy are common causes of nephrotic syndrome. Variants in >20 genes, including genes critical for mitochondrial function, have been associated with these podocyte diseases. One such gene, PDSS2, is required for synthesis of the decaprenyl tail of coenzyme Q10 (Q10) in humans. The mouse gene Pdss2 is mutated in the kd/kd mouse model of collapsing glomerulopathy. We examined the hypothesis that human PDSS2 polymorphisms are associated with podocyte diseases. We genotyped 377 patients with primary FSGS or collapsing glomerulopathy, together with 900 controls, for 9 single-nucleotide polymorphisms in the PDSS2 gene in a case-control study. Subjects included 247 African American (AA) and 130 European American (EA) patients and 641 AA and 259 EA controls. Among EAs, a pair of proxy SNPs was significantly associated with podocyte disease, and patients homozygous for one PDSS2 haplotype had a strongly increased risk for podocyte disease. By contrast, the distribution of PDSS2 genotypes and haplotypes was similar in AA patients and controls. Thus a PDSS2 haplotype, which has a frequency of 13% in the EA control population and a homozygote frequency of 1.2%, is associated with a significantly increased risk for FSGS and collapsing glomerulopathy in EAs. Lymphoblastoid cell lines from FSGS patients had significantly less Q10 than cell lines from controls; contrary to expectation, this finding was independent of PDSS2 haplotype. These results suggest that FSGS patients have Q10 deficiency and that this deficiency is manifested in patient-derived lymphoblastoid cell lines.

Indexed as

AdolescentAdultAlkyl and Aryl TransferasesB-Lymphocyte SubsetsCase-Control StudiesGlomerulosclerosis, Focal SegmentalHaplotypesHumansLymphocyte ActivationMiddle AgedPolymorphism, Single NucleotideUbiquinoneYoung AdultAlkyl and Aryl Transferasescoenzyme Q10prenyl diphosphate synthase, subunit 2, humanUbiquinonecollapsing glomerulopathyfocal segmental glomerulosclerosismitochondrianephrotic syndromeubiquinone

Identifiers

PMID23926186
PMCPMC3798722
OpenAlexW1994167283

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.