Evidence map›Paper›PMID 23926102›Full record

ArticleThe Journal of biological chemistry2013

Neil3 and NEIL1 DNA glycosylases remove oxidative damages from quadruplex DNA and exhibit preferences for lesions in the telomeric sequence context.

Jia Zhou, Minmin Liu, Aaron M Fleming, Cynthia J Burrows, Susan S Wallace

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 92 papers.

0numbers the graph read from it
0cells of the map it votes in
92citing papers in PubMed
6.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

92 citing papers in PubMed, 129 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. 8-Oxoguanine: A Lesion, an Epigenetic Mark, or a Molecular Signal?International journal of molecular sciences · 2025
    Review
  5. Article
  6. Review
  7. Oxidative Stress and DNA Damage at Telomeres.Cold Spring Harbor perspectives in biology · 2025
    Review
  8. Review
  9. Position-Dependent Effects of AP Sites Within anInternational journal of molecular sciences · 2025
    Article
  10. Research progress on the role of the NEIL family in cancer.Frontiers in cell and developmental biology · 2025
    Review
  11. Review
  12. Article
  13. Review
  14. Article
  15. Article
  16. Review
  17. Review
  18. Crosstalk between G-quadruplex and ROS.Cell death & disease · 2023
    Review
  19. Article
  20. Article

32 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Jia ZhouDepartment of Microbiology and Molecular Genetics, The Markey Center for Molecular Genetics, The University of Vermont, Burlington, Vermont 05405-0068.
Minmin LiuDepartment of Microbiology and Molecular Genetics, The Markey Center for Molecular Genetics, The University of Vermont, Burlington, Vermont 05405-0068.
Aaron M FlemingDepartment of Chemistry, University of Utah, Salt Lake City, Utah 84112-0850.
Cynthia J BurrowsDepartment of Chemistry, University of Utah, Salt Lake City, Utah 84112-0850.
Susan S WallaceDepartment of Microbiology and Molecular Genetics, The Markey Center for Molecular Genetics, The University of Vermont, Burlington, Vermont 05405-0068. Electronic address: susan.wallace@uvm.edu.
University of Vermont · USUniversity of Utah · US

Funding

SUBSTRATE SPECIFICITY OF THE BER OXIDATIVE DNA GLYCOSYLASESP01CA098993 · NCI · UNIVERSITY OF VERMONT &ST AGRIC COLLEGE · PI LEE, ANDREA J · 2004 to 2021
$25.9M
Chemistry and Biology of Oxidized Purine Lesions in DNAR01CA090689 · NCI · UNIVERSITY OF UTAH · PI BURROWS, CYNTHIA J, DAVID, SHEILA SUE · 2002 to 2019
$5.5M
NCI NIH HHS CA 090689NCI NIH HHS P01 CA 098993NCI NIH HHS P01 CA098993NCI NIH HHS R01 CA090689
6 · The paper itself

Abstract

The telomeric DNA of vertebrates consists of d(TTAGGG)n tandem repeats, which can form quadruplex DNA structures in vitro and likely in vivo. Despite the fact that the G-rich telomeric DNA is susceptible to oxidation, few biochemical studies of base excision repair in telomeric DNA and quadruplex structures have been done. Here, we show that telomeric DNA containing thymine glycol (Tg), 8-oxo-7,8-dihydroguanine (8-oxoG), guanidinohydantoin (Gh), or spiroiminodihydantoin (Sp) can form quadruplex DNA structures in vitro. We have tested the base excision activities of five mammalian DNA glycosylases (NEIL1, NEIL2, mNeil3, NTH1, and OGG1) on these lesion-containing quadruplex substrates and found that only mNeil3 had excision activity on Tg in quadruplex DNA and that the glycosylase exhibited a strong preference for Tg in the telomeric sequence context. Although Sp and Gh in quadruplex DNA were good substrates for mNeil3 and NEIL1, none of the glycosylases had activity on quadruplex DNA containing 8-oxoG. In addition, NEIL1 but not mNeil3 showed enhanced glycosylase activity on Gh in the telomeric sequence context. These data suggest that one role for Neil3 and NEIL1 is to repair DNA base damages in telomeres in vivo and that Neil3 and Neil1 may function in quadruplex-mediated cellular events, such as gene regulation via removal of damaged bases from quadruplex DNA.

Indexed as

G-QuadruplexesAnimalsDeoxyribonuclease (Pyrimidine Dimer)DNA-(Apurinic or Apyrimidinic Site) LyaseDNA GlycosylasesDNA RepairEndodeoxyribonucleasesGuanosineHumansMiceN-Glycosyl HydrolasesOxidation-ReductionTelomere8-hydroxyguanosineDeoxyribonuclease (Pyrimidine Dimer)DNA-(Apurinic or Apyrimidinic Site) LyaseDNA GlycosylasesEndodeoxyribonucleasesGuanosineNEIL1 protein, humanNeil1 protein, mouseNEIL2 protein, humanNEIL3 protein, humanNEIL3 protein, mouseN-Glycosyl HydrolasesNTHL1 protein, humanoxoguanine glycosylase 1, humanBase Excision RepairDNA DamageDNA GlycosylasesDNA RepairDNA StructureNEIL1Neil3QuadruplexSequence ContextTelomeres

Identifiers

PMID23926102
PMCPMC3779722
OpenAlexW2013499563

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.