Evidence map›Paper›PMID 23924784›Full record

ArticleThe ISME journal2014

Allying with armored snails: the complete genome of gammaproteobacterial endosymbiont.

Satoshi Nakagawa, Shigeru Shimamura, Yoshihiro Takaki, Yohey Suzuki, Shun-ichi Murakami, Tamaki Watanabe, So Fujiyoshi, Sayaka Mino, Tomoo Sawabe, Takahiro Maeda and 6 more

Open access · bronzeAbstract read
In one paragraph

Article in The ISME journal, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
8.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 79 citations in OpenAlex.

  1. Article
  2. iScience · 2026
    Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Chemosynthetic symbiont with a drastically reduced genome serves as primary energy storage in the marine flatwormProceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 5 institutions in 1 country.

Satoshi Nakagawa1] Laboratory of Microbiology, Faculty of Fisheries Sciences, Hokkaido University, Hakodate, Japan [2] Subsurface Geobiology Advanced Research (SUGAR) Project, Institute of Biogeosciences, Japan Agency for Marine-Earth Science and Technology (JAMSTEC), Yokosuka, Japan.
Shigeru ShimamuraSubsurface Geobiology Advanced Research (SUGAR) Project, Institute of Biogeosciences, Japan Agency for Marine-Earth Science and Technology (JAMSTEC), Yokosuka, Japan.
Yoshihiro TakakiCooperative Research Project for Extremophiles, Institute of Biogeosciences, JAMSTEC, Yokosuka, Japan.
Yohey SuzukiDepartment of Earth and Planetary Science, Graduate School of Science, University of Tokyo, Tokyo, Japan.
Shun-ichi MurakamiLaboratory of Microbiology, Faculty of Fisheries Sciences, Hokkaido University, Hakodate, Japan.
Tamaki WatanabeLaboratory of Microbiology, Faculty of Fisheries Sciences, Hokkaido University, Hakodate, Japan.
So FujiyoshiLaboratory of Microbiology, Faculty of Fisheries Sciences, Hokkaido University, Hakodate, Japan.
Sayaka MinoLaboratory of Microbiology, Faculty of Fisheries Sciences, Hokkaido University, Hakodate, Japan.
Tomoo SawabeLaboratory of Microbiology, Faculty of Fisheries Sciences, Hokkaido University, Hakodate, Japan.
Takahiro Maeda1] Laboratory of Advanced Chemical Biology, Graduate School of Life Science, Hokkaido University, Sapporo, Japan [2] Amino Up Chemical Company, Sapporo, Japan.
Hiroko MakitaSubsurface Geobiology Advanced Research (SUGAR) Project, Institute of Biogeosciences, Japan Agency for Marine-Earth Science and Technology (JAMSTEC), Yokosuka, Japan.
Suguru NemotoEnoshima Aquarium, Fujisawa, Japan.
Shin-Ichiro Nishimura1] Laboratory of Advanced Chemical Biology, Graduate School of Life Science, Hokkaido University, Sapporo, Japan [2] Medicinal Chemistry Pharmaceuticals, Co. Ltd., Sapporo, Japan.
Hiromi WatanabeMarine Biodiversity Research Program, JAMSTEC, Yokosuka, Japan.
Tomo-o WatsujiSubsurface Geobiology Advanced Research (SUGAR) Project, Institute of Biogeosciences, Japan Agency for Marine-Earth Science and Technology (JAMSTEC), Yokosuka, Japan.
Ken TakaiSubsurface Geobiology Advanced Research (SUGAR) Project, Institute of Biogeosciences, Japan Agency for Marine-Earth Science and Technology (JAMSTEC), Yokosuka, Japan.
Hokkaido University · JPJapan Agency for Marine-Earth Science and Technology · JPAmino Up (Japan) · JPEnoshima Aquarium · JPTokyo University of Science · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Deep-sea vents harbor dense populations of various animals that have their specific symbiotic bacteria. Scaly-foot gastropods, which are snails with mineralized scales covering the sides of its foot, have a gammaproteobacterial endosymbiont in their enlarged esophageal glands and diverse epibionts on the surface of their scales. In this study, we report the complete genome sequencing of gammaproteobacterial endosymbiont. The endosymbiont genome displays features consistent with ongoing genome reduction such as large proportions of pseudogenes and insertion elements. The genome encodes functions commonly found in deep-sea vent chemoautotrophs such as sulfur oxidation and carbon fixation. Stable carbon isotope ((13)C)-labeling experiments confirmed the endosymbiont chemoautotrophy. The genome also includes an intact hydrogenase gene cluster that potentially has been horizontally transferred from phylogenetically distant bacteria. Notable findings include the presence and transcription of genes for flagellar assembly, through which proteins are potentially exported from bacterium to the host. Symbionts of snail individuals exhibited extreme genetic homogeneity, showing only two synonymous changes in 19 different genes (13 810 positions in total) determined for 32 individual gastropods collected from a single colony at one time. The extremely low genetic individuality in endosymbionts probably reflects that the stringent symbiont selection by host prevents the random genetic drift in the small population of horizontally transmitted symbiont. This study is the first complete genome analysis of gastropod endosymbiont and offers an opportunity to study genome evolution in a recently evolved endosymbiont.

Indexed as

AnimalsCarbon IsotopesDNA Transposable ElementsFlagellaGammaproteobacteriaGenetic VariationGenome, BacterialHydrothermal VentsMolecular Sequence DataOxidation-ReductionPhylogenySnailsSymbiosisCarbon IsotopesDNA Transposable Elements

Identifiers

PMID23924784
PMCPMC3869010
OpenAlexW2030640333

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.