Evidence map›Paper›PMID 23924636›Full record

ArticleDevelopment (Cambridge, England)2013

Transcriptional components of anteroposterior positional information during zebrafish fin regeneration.

Gregory Nachtrab, Kazu Kikuchi, Valerie A Tornini, Kenneth D Poss

Open access · bronzeAbstract read
In one paragraph

Article in Development (Cambridge, England), 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 65 citations in OpenAlex.

  1. Early ultraviolet exposure disrupts late dorsal fin skeletal development in zebrafish.Developmental dynamics : an official publication of the American Association of Anatomists · 2026
    Article
  2. Signal control during tissue regeneration in adult animals.Nature reviews. Molecular cell biology · 2026
    Review
  3. Article
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  11. Disruption of the creb3l1 gene causes defects in caudal fin regeneration and patterning in zebrafish Danio rerio.Developmental dynamics : an official publication of the American Association of Anatomists · 2024
    Article
  12. Hallmarks of regeneration.Cell stem cell · 2024
    Review
  13. Article
  14. Coordinated patterning of zebrafish caudal fin symmetry by a central and two peripheral organizers.Developmental dynamics : an official publication of the American Association of Anatomists · 2022
    Article
  15. Review
  16. Review
  17. Regulation of zebrafish fin regeneration by vitamin D signaling.Developmental dynamics : an official publication of the American Association of Anatomists · 2021
    Article
  18. Spiny and soft-rayed fin domains in acanthomorph fish are established through a BMP-Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Gregory NachtrabDepartment of Cell Biology and Howard Hughes Medical Institute, Duke University Medical Center, Durham, NC 27710, USA.
Kazu Kikuchi
Valerie A Tornini
Kenneth D Poss
Duke Medical Center · USDuke University Hospital · USHoward Hughes Medical Institute · US

Funding

Training Program in Developmental & Stem Cell BiologyT32HD040372 · NICHD · DUKE UNIVERSITY · PI Terry H Lechler · 2001 to 2026
$8.9M
Regulation of Appendage Regeneration in ZebrafishR01GM074057 · NIGMS · DUKE UNIVERSITY · PI POSS, KENNETH D · 2006 to 2017
$3.7M
Howard Hughes Medical InstituteNICHD NIH HHS T32 HD040372NIGMS NIH HHS GM074057NIGMS NIH HHS R01 GM074057
6 · The paper itself

Abstract

Many fish and salamander species regenerate amputated fins or limbs, restoring the size and shape of the original appendage. Regeneration requires that spared cells retain or recall information encoding pattern, a phenomenon termed positional memory. Few factors have been implicated in positional memory during vertebrate appendage regeneration. Here, we investigated potential regulators of anteroposterior (AP) pattern during fin regeneration in adult zebrafish. Sequence-based profiling from tissues along the AP axis of uninjured pectoral fins identified many genes with region-specific expression, several of which encoded transcription factors with known AP-specific expression or function in developing embryonic pectoral appendages. Transgenic reporter strains revealed that regulatory sequences of the transcription factor gene alx4a activated expression in fibroblasts and osteoblasts within anterior fin rays, whereas hand2 regulatory sequences activated expression in these same cell types within posterior rays. Transgenic overexpression of hand2 in all pectoral fin rays did not affect formation of the proliferative regeneration blastema, yet modified the lengths and widths of regenerating bones. Hand2 influenced the character of regenerated rays in part by elevation of the vitamin D-inactivating enzyme encoded by cyp24a1, contributing to region-specific regulation of bone metabolism. Systemic administration of vitamin D during regeneration partially rescued bone defects resulting from hand2 overexpression. Thus, bone-forming cells in a regenerating appendage maintain expression throughout life of transcription factor genes that can influence AP pattern, and differ across the AP axis in their expression signatures of these and other genes. These findings have implications for mechanisms of positional memory in vertebrate tissues.

Indexed as

Transcription, GeneticAnimal FinsAnimalsBasic Helix-Loop-Helix ProteinsBody PatterningBone and BonesFibroblastsGene Expression Regulation, DevelopmentalMaleModels, BiologicalOrgan SpecificityOsteoblastsRegenerationSignal TransductionVitamin DZebrafishBasic Helix-Loop-Helix Proteinshand2 protein, zebrafishVitamin DZebrafish ProteinsAnteroposterior patterningBlastemaFinHand2Positional memoryRegenerationVitamin DZebrafish

Identifiers

PMID23924636
PMCPMC3754474
OpenAlexW2113252442

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.