ArticlePloS one2013
ParallelStructure: a R package to distribute parallel runs of the population genetics program STRUCTURE on multi-core computers.
Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 80 papers.
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Who cites it
80 citing papers in PubMed.
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- Genetic divergence of farmed Atlantic halibut (Hippoglossus hippoglossus) and potential for impact on wild populations.BMC research notes · 2026Article
- Genetic Structure of Blue Ling,Ecology and evolution · 2026Article
- Where Are You From? Finding the Origin of the Recently Observed Sprat in Iceland Using a Panel of SNPs.Ecology and evolution · 2026Article
- Genetics in the Ocean's Twilight Zone: Population Structure of the Silvery Lightfish Across Its Distribution Range.Evolutionary applications · 2026Article
- Beyond protist generalizations: different evolutionary trajectories in closely related microbial species.ISME communications · 2026Article
- Modelling the Consequences of Domestication-Introgression in Wild Populations Using Genetic Markers Under Varying Degrees of Selection.Evolutionary applications · 2025Article
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- Genetics in the Ocean's Twilight Zone: Population Structure of the Glacier Lanternfish Across Its Distribution Range.Evolutionary applications · 2024Article
- Genetic Stock Identification Reveals Mismatches Between Management Areas and Population Genetic Structure in a Migratory Pelagic Fish.Evolutionary applications · 2024Article
- Limited Parallelism in Genetic Adaptation to Brackish Water Bodies in European Sprat and Atlantic Herring.Genome biology and evolution · 2024Article
- Cryptic diversity in southern African kelp.Scientific reports · 2024Article
- Estimating distribution and abundance of wide-ranging species with integrated spatial models: Opportunities revealed by the first wolf assessment in south-central Italy.Ecology and evolution · 2024Article
- Defining Populations and Predicting Future Suitable Niche Space in the Geographically Disjunct, Narrowly Endemic Leafy Prairie-Clover (Plants (Basel, Switzerland) · 2024Article
- The genetic legacy of the first successful reintroduction of a mammal to Britain: Founder events and attempted genetic rescue in Scotland's beaver population.Evolutionary applications · 2024Article
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- Are rabid raccoons (Evolutionary applications · 2023Article
20 more citing papers are in PubMed but not listed here.
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Authors and funding
2 authors.
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No grant is acknowledged in the PubMed record.
Abstract
This software package provides an R-based framework to make use of multi-core computers when running analyses in the population genetics program STRUCTURE. It is especially addressed to those users of STRUCTURE dealing with numerous and repeated data analyses, and who could take advantage of an efficient script to automatically distribute STRUCTURE jobs among multiple processors. It also consists of additional functions to divide analyses among combinations of populations within a single data set without the need to manually produce multiple projects, as it is currently the case in STRUCTURE. The package consists of two main functions: MPI_structure() and parallel_structure() as well as an example data file. We compared the performance in computing time for this example data on two computer architectures and showed that the use of the present functions can result in several-fold improvements in terms of computation time. ParallelStructure is freely available at https://r-forge.r-project.org/projects/parallstructure/.
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