Evidence map›Paper›PMID 23922706›Full record

ArticlePloS one2013

Simple system for isothermal DNA amplification coupled to lateral flow detection.

Kristina Roskos, Anna I Hickerson, Hsiang-Wei Lu, Tanya M Ferguson, Deepali N Shinde, Yvonne Klaue, Angelika Niemz

Abstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed.

  1. Article
  2. Review
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  15. A mathematical model for a biphasic DNA amplification reaction.Journal of the Royal Society, Interface · 2019
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Kristina RoskosKeck Graduate Institute of Applied Life Sciences, Claremont, California, United States of America.
Anna I Hickerson
Hsiang-Wei Lu
Tanya M Ferguson
Deepali N Shinde
Yvonne Klaue
Angelika Niemz

Funding

Rapid Diagnosis of MDR TB from Sputum using a Small Fully Integrated Nucleic AcidR01AI090831 · NIAID · KECK GRADUATE INST OF APPLIED LIFE SCIS · PI NIEMZ, ANGELIKA · 2010 to 2013
$3.5M
Rapid Isothermal Nucleic Acid Amplification Assay and Device for HSV TestingR01AI076247 · NIAID · KECK GRADUATE INST OF APPLIED LIFE SCIS · PI NIEMZ, ANGELIKA, STERLING, JAMES D · 2008 to 2011
$2.4M
NIAID NIH HHS R01 AI076247NIAID NIH HHS R01AI076247NIAID NIH HHS R01 AI090831NIAID NIH HHS R01AI090831
6 · The paper itself

Abstract

Infectious disease diagnosis in point-of-care settings can be greatly improved through integrated, automated nucleic acid testing devices. We have developed an early prototype for a low-cost system which executes isothermal DNA amplification coupled to nucleic acid lateral flow (NALF) detection in a mesofluidic cartridge attached to a portable instrument. Fluid handling inside the cartridge is facilitated through one-way passive valves, flexible pouches, and electrolysis-driven pumps, which promotes a compact and inexpensive instrument design. The closed-system disposable prevents workspace amplicon contamination. The cartridge design is based on standard scalable manufacturing techniques such as injection molding. Nucleic acid amplification occurs in a two-layer pouch that enables efficient heat transfer. We have demonstrated as proof of principle the amplification and detection of Mycobacterium tuberculosis (M.tb) genomic DNA in the cartridge, using either Loop Mediated Amplification (LAMP) or the Exponential Amplification Reaction (EXPAR), both coupled to NALF detection. We envision that a refined version of this cartridge, including upstream sample preparation coupled to amplification and detection, will enable fully-automated sample-in to answer-out infectious disease diagnosis in primary care settings of low-resource countries with high disease burden.

Indexed as

TemperatureDNA, BacterialMicrofluidicsMycobacterium tuberculosisNucleic Acid Amplification TechniquesRheologyDNA, Bacterial

Identifiers

PMID23922706
PMCPMC3724848

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.