Evidence map›Paper›PMID 23921635›Full record

ArticleNucleic acids research2013

Transcription activator like effector (TALE)-directed piggyBac transposition in human cells.

Jesse B Owens, Damiano Mauro, Ilko Stoytchev, Mital S Bhakta, Moon-Soo Kim, David J Segal, Stefan Moisyadi

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
4.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 64 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Review
  5. Article
  6. Review
  7. Precise genetic engineering withPlant biotechnology (Tokyo, Japan) · 2023
    Article
  8. Gene editing and its applications in biomedicine.Science China. Life sciences · 2022
    Review
  9. Article
  10. Article
  11. Article
  12. Applications ofStem cells international · 2021
    Review
  13. Review
  14. Article
  15. Article
  16. RNA-guidedSynthetic biology (Oxford, England) · 2019
    Article
  17. Article
  18. Review
  19. Article
  20. Beyond editing to writing large genomes.Nature reviews. Genetics · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Jesse B OwensInstitute for Biogenesis Research, Department of Anatomy, Biochemistry and Physiology, John A. Burns School of Medicine, University of Hawaii at Manoa, Honolulu, HI 96822, USA, Genome Center, Department of Biochemistry and Molecular Medicine, University of California, Davis, CA 95616, USA and Manoa BioSciences, Honolulu, HI 96819, USA.
Damiano Mauro
Ilko Stoytchev
Mital S Bhakta
Moon-Soo Kim
David J Segal
Stefan Moisyadi
University of Hawaiʻi at Mānoa · USBiogen (United States) · USUniversity of California, Davis · US

Funding

Staff InvestigatorsP30CA093373 · NCI · UNIVERSITY OF CALIFORNIA DAVIS · PI Laura Marcu · 2002 to 2026
$84.9M
Transgenic Mouse, ICSI and IVF CoreP20GM103457 · NIGMS · UNIVERSITY OF HAWAII AT MANOA · PI WARD, WILLIAM S · 2012 to 2018
$12.9M
ULTRASOUND-TARGETED MICROBUBBLE DESTRUCTION IN COMBINATION WITH THE PIGGYBACP20RR024206 · NCRR · UNIVERSITY OF HAWAII AT MANOA · PI GOH, WILLIAM AI-KENG · 2008 to 2011
$8.4M
Training Program In Basic & Translational Cardiovascular ScienceT32HL086350 · NHLBI · UNIVERSITY OF CALIFORNIA AT DAVIS · PI Martin Cadeiras, David A. Liem · 2008 to 2026
$7.1M
Transposon Based Mammalian Transgenesis and TransfectionR01GM083158 · NIGMS · UNIVERSITY OF HAWAII AT MANOA · PI MOISYADI, STEFAN · 2008 to 2012
$1.5M
NCI NIH HHS P30 CA093373NCRR NIH HHS 5P20RR024206NHLBI NIH HHS T32 HL086350NIGMS NIH HHS P20 GM103457NIGMS NIH HHS R01GM083158-01A1
6 · The paper itself

Abstract

Insertional therapies have shown great potential for combating genetic disease and safer methods would undoubtedly broaden the variety of possible illness that can be treated. A major challenge that remains is reducing the risk of insertional mutagenesis due to random insertion by both viral and non-viral vectors. Targetable nucleases are capable of inducing double-stranded breaks to enhance homologous recombination for the introduction of transgenes at specific sequences. However, off-target DNA cleavages at unknown sites can lead to mutations that are difficult to detect. Alternatively, the piggyBac transposase is able perform all of the steps required for integration; therefore, cells confirmed to contain a single copy of a targeted transposon, for which its location is known, are likely to be devoid of aberrant genomic modifications. We aimed to retarget transposon insertions by comparing a series of novel hyperactive piggyBac constructs tethered to a custom transcription activator like effector DNA-binding domain designed to bind the first intron of the human CCR5 gene. Multiple targeting strategies were evaluated using combinations of both plasmid-DNA and transposase-protein relocalization to the target sequence. We demonstrated user-defined directed transposition to the CCR5 genomic safe harbor and isolated single-copy clones harboring targeted integrations.

Indexed as

DNA Transposable ElementsGene TargetingDNA-Binding ProteinsHEK293 CellsHumansReceptors, CCR5Recombinant Fusion ProteinsTransposasesCCR5 protein, humanDNA-Binding ProteinsDNA Transposable ElementsReceptors, CCR5Recombinant Fusion ProteinsTransposases

Identifiers

PMID23921635
PMCPMC3799441
OpenAlexW2097563622

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.