ReviewPhotosynthesis research2013
Structure-based modeling of energy transfer in photosynthesis.
Review in Photosynthesis research, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.
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Who cites it
15 citing papers in PubMed.
- Quantum coherent dynamics in allophycocyanin trimer complex.Science advances · 2026Article
- Quantum simulation of charge and exciton transfer in multi-mode models using engineered reservoirs.Nature communications · 2025Article
- A Simple Expression for the Screening of Excitonic Couplings between Chlorophylls as Inferred for Photosystem I Trimers.International journal of molecular sciences · 2024Article
- Protein Effects on the Excitation Energies and Exciton Dynamics of the CP24 Antenna Complex.The journal of physical chemistry. B · 2024Article
- Observation of Dark States in Two-Dimensional Electronic Spectra of Chlorosomes.The journal of physical chemistry. B · 2024Article
- Short-Range Effects in the Special Pair of Photosystem II Reaction Centers: The Nonconservative Nature of Circular Dichroism.The journal of physical chemistry letters · 2023Article
- Excitation Energy Transfer between Higher Excited States of Photosynthetic Pigments: 2. ChlorophyllACS omega · 2023Article
- Ultrafast Anisotropy Decay Reveals Structure and Energy Transfer in Supramolecular Aggregates.The journal of physical chemistry. B · 2023Article
- Recent progress in atomistic modeling of light-harvesting complexes: a mini review.Photosynthesis research · 2023Review
- The Relationship between the Spatial Arrangement of Pigments and Exciton Transition Moments in Photosynthetic Light-Harvesting Complexes.International journal of molecular sciences · 2021Article
- Accurate Modeling of Excitonic Coupling in Cyanine Dye Cy3.The journal of physical chemistry. A · 2021Article
- Semiclassical Modified Redfield and Generalized Förster Theories of Exciton Relaxation/Transfer in Light-Harvesting Complexes: The Quest for the Principle of Detailed Balance.The journal of physical chemistry. B · 2021Article
- Structural basis of light-harvesting in the photosystem II core complex.Protein science : a publication of the Protein Society · 2020Review
- Theory of FRET "Spectroscopic Ruler" for Short Distances: Application to Polyproline.The journal of physical chemistry. B · 2018Article
- Revealing the functional states in the active site of BLUF photoreceptors from electrochromic shift calculations.The journal of physical chemistry. B · 2014Article
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Authors and funding
5 authors.
Funding
Abstract
We provide a minimal model for a structure-based simulation of excitation energy transfer in pigment-protein complexes (PPCs). In our treatment, the PPC is assembled from its building blocks. The latter are defined such that electron exchange occurs only within, but not between these units. The variational principle is applied to investigate how the Coulomb interaction between building blocks changes the character of the electronic states of the PPC. In this way, the standard exciton Hamiltonian is obtained from first principles and a hierarchy of calculation schemes for the parameters of this Hamiltonian arises. Possible extensions of this approach are discussed concerning (i) the inclusion of dispersive site energy shifts and (ii) the inclusion of electron exchange between pigments. First results on electron exchange within the special pair of photosystem II of cyanobacteria and higher plants are presented and compared with earlier results on purple bacteria. In the last part of this mini-review, the coupling of electronic and nuclear degrees of freedom is considered. First, the standard exciton-vibrational Hamiltonian is parameterized with the help of a normal mode analysis of the PPC. Second, dynamical theories are discussed that exploit this Hamiltonian in the study of dissipative exciton motion.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.