Evidence map›Paper›PMID 23920106›Full record

ArticleGene expression patterns : GEP2013

Catalog of mRNA expression patterns for DNA methylating and demethylating genes in developing mouse lower urinary tract.

Kimberly P Keil, Helene M Altmann, Vatsal Mehta, Lisa L Abler, Erik A Elton, Chad M Vezina

Open access · greenAbstract read
In one paragraph

Article in Gene expression patterns : GEP, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.6field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. In vivo replacement of damaged bladder urothelium by Wolffian duct epithelial cells.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  3. DNA methylation in development and disease: an overview for prostate researchers.American journal of clinical and experimental urology · 2018
    Review
  4. Alterations in gene expression and DNA methylation during murine and human lung alveolar septation.American journal of respiratory cell and molecular biology · 2015
    Article
  5. Review
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Kimberly P KeilDepartment of Comparative Biosciences, University of Wisconsin-Madison, 1656 Linden Dr., Madison, WI 53706, USA.
Helene M Altmann
Vatsal Mehta
Lisa L Abler
Erik A Elton
Chad M Vezina
University of Wisconsin–Madison · US

Funding

Murine Atlas of Genitourinary Smooth Muscle DevelopmentU01DK070219 · NIDDK · CINCINNATI CHILDRENS HOSP MED CTR · PI LESSARD, JAMES LOUIS · 2005 to 2009
$4.3M
Beta-Catenin and Prostate DevelopmentK01DK083425 · NIDDK · UNIVERSITY OF WISCONSIN-MADISON · PI VEZINA, CHAD M. · 2009 to 2013
$763k
The Epigenome: A New Target for Androgen Receptor in Developing ProstateR03DK096074 · NIDDK · UNIVERSITY OF WISCONSIN-MADISON · PI VEZINA, CHAD M. · 2012 to 2013
$148k
NIDDK NIH HHS DK070219NIDDK NIH HHS DK083425NIDDK NIH HHS DK096074NIDDK NIH HHS K01 DK083425NIDDK NIH HHS R03 DK096074NIDDK NIH HHS U01 DK070219
6 · The paper itself

Abstract

The mouse prostate develops from a component of the lower urinary tract (LUT) known as the urogenital sinus (UGS). This process requires androgens and signaling between mesenchyme and epithelium. Little is known about DNA methylation during prostate development, including which factors are expressed, whether their expression changes over time, and if DNA methylation contributes to androgen signaling or influences signaling between mesenchyme and epithelium. We used in situ hybridization to evaluate the spatial and temporal expression pattern of mRNAs which encode proteins responsible for establishing, maintaining or remodeling DNA methylation. These include DNA methyltransferases, DNA deaminases, DNA glycosylases, base excision repair and mismatch repair pathway members. The mRNA expression patterns were compared between male and female LUT prior to prostatic bud formation (14.5 days post coitus (dpc)), during prostatic bud formation (17.5 dpc) and during prostatic branching morphogenesis (postnatal day (P) 5). We found dramatic changes in the patterns of these mRNAs over the course of prostate development and identified examples of sexually dimorphic mRNA expression. Future investigation into how DNA methylation patterns are established, maintained and remodeled during the course of embryonic prostatic bud formation may provide insight into prostate morphogenesis and disease.

Indexed as

TranscriptomeAdenosine TriphosphatasesAICDA (Activation-Induced Cytidine Deaminase)AnimalsAPOBEC-1 DeaminaseCytidine DeaminaseDNA-Binding ProteinsDNA (Cytosine-5-)-MethyltransferasesDNA GlycosylasesDNA Repair EnzymesEndodeoxyribonucleasesFemaleGene Expression Regulation, DevelopmentalGene Expression Regulation, EnzymologicMaleMiceAdenosine TriphosphatasesAICDA (Activation-Induced Cytidine Deaminase)APOBEC-1 DeaminaseApobec1 protein, mouseChd2 protein, mouseCytidine DeaminaseDNA-Binding ProteinsDNA (Cytosine-5-)-MethyltransferasesDNA GlycosylasesDNA Repair EnzymesEndodeoxyribonucleasesMismatch Repair Endonuclease PMS2Pms2 protein, mouseRNA, Messengerandrogen receptorARdays post coitusDNA demethylationDNA methylationdpcEpigeneticsIHCimmunohistochemistryin situ hybridizationISHlower urinary tractLower urinary tractLUTPpostnatal dayProstateUGSurogenital sinusUrogenital sinus

Identifiers

PMID23920106
PMCPMC3825751
OpenAlexW1993649613

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.